8SZB image
Entry Detail
PDB ID:
8SZB
EMDB ID:
Title:
Cryo-EM Structure of NINJ2 Filament at 3.07 Angstrom Resolution
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-05-29
Release Date:
2023-06-14
Method Details:
Experimental Method:
Resolution:
3.07 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ninjurin-2
Chain IDs:A (auth: F), B (auth: A), C, D (auth: E), E (auth: D), F (auth: B)
Chain Length:167
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
How NINJ1 mediates plasma membrane rupture and why NINJ2 cannot.
Cell 188 292 302.e11 (2025)
PMID: 39667936 DOI: 10.1016/j.cell.2024.11.021

Abstact

Ninjurin-1 (NINJ1) is an active executioner of plasma membrane rupture (PMR), a process previously thought to be a passive osmotic lysis event in lytic cell death. Ninjurin-2 (NINJ2) is a close paralog of NINJ1 but cannot mediate PMR. Using cryogenic electron microscopy (cryo-EM), we show that NINJ1 and NINJ2 both assemble into linear filaments that are hydrophobic on one side but hydrophilic on the other. This structural feature and other evidence point to a PMR mechanism by which NINJ1 filaments wrap around and solubilize membrane fragments and, less frequently, form pores in the plasma membrane. In contrast to the straight NINJ1 filament, the NINJ2 filament is curved toward the intracellular space, preventing its circularization or even assembly on a relatively flat membrane to mediate PMR. Mutagenesis studies further demonstrate that the NINJ2 filament curvature is induced by strong association with lipids, particularly a cholesterol molecule, at the cytoplasmic leaflet of the lipid bilayer.

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Primary Citation of related structures