8SZ3 image
Deposition Date 2023-05-26
Release Date 2023-12-06
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8SZ3
Keywords:
Title:
Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with compound 7j
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.32 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2
Gene (Uniprot):B3GNT2
Chain IDs:A, B
Chain Length:397
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Imidazolone as an Amide Bioisostere in the Development of beta-1,3- N -Acetylglucosaminyltransferase 2 (B3GNT2) Inhibitors.
J.Med.Chem. 66 16120 16140 (2023)
PMID: 37988652 DOI: 10.1021/acs.jmedchem.3c01517

Abstact

B3GNT2 is responsible for elongation of cell surface long-chain polylactosamine, which influences the regulation of the immune response, making it an attractive target for immunomodulation. In the development of amide containing B3GNT2 inhibitors guided by structure-based drug design, imidazolones were found to successfully serve as amide bioisosteres. This novel imidazolone isosteric strategy alleviated torsional strain of the amide bond on binding to B3GNT2 and improved potency, isoform selectivity, as well as certain physicochemical and pharmacokinetic properties. Herein, we present the synthesis, SAR, X-ray cocrystal structures, and in vivo PK properties of imidazol-4-ones in the context of B3GNT2 inhibition.

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