8SYN image
Deposition Date 2023-05-25
Release Date 2023-11-01
Last Version Date 2024-07-03
Entry Detail
PDB ID:
8SYN
Title:
Human VPS35L/VPS29/VPS26C Complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.94 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VPS35 endosomal protein-sorting factor-like
Gene (Uniprot):VPS35L
Chain IDs:A
Chain Length:963
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 29
Gene (Uniprot):VPS29
Chain IDs:B
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 26C
Gene (Uniprot):VPS26C
Chain IDs:C
Chain Length:297
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural organization of the retriever-CCC endosomal recycling complex.
Nat.Struct.Mol.Biol. 31 910 924 (2024)
PMID: 38062209 DOI: 10.1038/s41594-023-01184-4

Abstact

The recycling of membrane proteins from endosomes to the cell surface is vital for cell signaling and survival. Retriever, a trimeric complex of vacuolar protein-sorting-associated protein (VPS)35L, VPS26C and VPS29, together with the CCC complex comprising coiled-coil domain-containing (CCDC)22, CCDC93 and copper metabolism domain-containing (COMMD) proteins, plays a crucial role in this process. The precise mechanisms underlying retriever assembly and its interaction with CCC have remained elusive. Here, we present a high-resolution structure of retriever in humans determined using cryogenic electron microscopy. The structure reveals a unique assembly mechanism, distinguishing it from its remotely related paralog retromer. By combining AlphaFold predictions and biochemical, cellular and proteomic analyses, we further elucidate the structural organization of the entire retriever-CCC complex across evolution and uncover how cancer-associated mutations in humans disrupt complex formation and impair membrane protein homeostasis. These findings provide a fundamental framework for understanding the biological and pathological implications associated with retriever-CCC-mediated endosomal recycling.

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Primary Citation of related structures