8SYC image
Entry Detail
PDB ID:
8SYC
Keywords:
Title:
Crystal structure of PDE3B in complex with GSK4394835A
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-05-25
Release Date:
2024-02-07
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:cGMP-inhibited 3',5'-cyclic phosphodiesterase 3B
Mutations:K691D, R783D, A831E, K880E, S981D
Chain IDs:A, B (auth: D)
Chain Length:443
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation

Abstact

Human genetic evidence shows that PDE3B is associated with metabolic and dyslipidemia phenotypes. A number of PDE3 family selective inhibitors have been approved by the FDA for various indications; however, given the undesirable proarrhythmic effects in the heart, selectivity for PDE3B inhibition over closely related family members (such as PDE3A; 48% identity) is a critical consideration for development of PDE3B therapeutics. Selectivity for PDE3B over PDE3A may be achieved in a variety of ways, including properties intrinsic to the compound or tissue-selective targeting. The high (>95%) active site homology between PDE3A and B represents a massive obstacle for obtaining selectivity at the active site; however, utilization of libraries with high molecular diversity in high throughput screens may uncover selective chemical matter. Herein, we employed a DNA-encoded library screen to identify PDE3B-selective inhibitors and identified potent and selective boronic acid compounds bound at the active site.

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Primary Citation of related structures