8SXJ image
Deposition Date 2023-05-22
Release Date 2024-02-14
Last Version Date 2024-10-09
Entry Detail
PDB ID:
8SXJ
Title:
CH505 Disulfide Stapled SOSIP Bound to CH235.12 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:A, E, I
Chain Length:456
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV-1 gp41
Chain IDs:B, F, J
Chain Length:126
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:CH235.12 Heavy Chain
Chain IDs:C, G, K
Chain Length:122
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CH235.12 Light Chain
Chain IDs:D, H, L
Chain Length:105
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Microsecond dynamics control the HIV-1 Envelope conformation.
Sci Adv 10 eadj0396 eadj0396 (2024)
PMID: 38306419 DOI: 10.1126/sciadv.adj0396

Abstact

The HIV-1 Envelope (Env) glycoprotein facilitates host cell fusion through a complex series of receptor-induced structural changes. Although remarkable progress has been made in understanding the structures of various Env conformations, microsecond timescale dynamics have not been studied experimentally. Here, we used time-resolved, temperature-jump small-angle x-ray scattering to monitor structural rearrangements in an HIV-1 Env SOSIP ectodomain construct with microsecond precision. In two distinct Env variants, we detected a transition that correlated with known Env structure rearrangements with a time constant in the hundreds of microseconds range. A previously unknown structural transition was also observed, which occurred with a time constant below 10 μs, and involved an order-to-disorder transition in the trimer apex. Using this information, we engineered an Env SOSIP construct that locks the trimer in the prefusion closed state by connecting adjacent protomers via disulfides. Our findings show that the microsecond timescale structural dynamics play an essential role in controlling the Env conformation with impacts on vaccine design.

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Primary Citation of related structures