8SWX image
Entry Detail
PDB ID:
8SWX
EMDB ID:
Title:
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody Base4
Biological Source:
PDB Version:
Deposition Date:
2023-05-19
Release Date:
2024-05-22
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Surface protein gp120
Chain IDs:A, D (auth: E), F
Chain Length:516
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Transmembrane protein gp41
Chain IDs:B, C, E (auth: D)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Base4 Heavy Chain
Chain IDs:G (auth: H)
Chain Length:115
Number of Molecules:1
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:Base4 Light Chain
Chain IDs:H (auth: L)
Chain Length:93
Number of Molecules:1
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation

Abstact

Immunodominance of antibodies targeting non-neutralizing epitopes and the high level of somatic hypermutation within germinal centers (GCs) required for most HIV broadly neutralizing antibodies (bnAbs) are major impediments to the development of an effective HIV vaccine. Rational protein vaccine design and non-conventional immunization strategies are potential avenues to overcome these hurdles. Here, we report using implantable osmotic pumps to continuously deliver a series of epitope-targeted immunogens to rhesus macaques over the course of six months to prime and elicit antibody responses against the conserved fusion peptide (FP). GC responses and antibody specificities were tracked longitudinally using lymph node fine-needle aspirates and electron microscopy polyclonal epitope mapping (EMPEM), respectively, to show antibody responses to the FP/N611 glycan hole region were primed, although exhibited limited neutralization breadth. Application of cryoEMPEM delineated key residues for on-target and off-target responses that can drive the next round of structure-based vaccine design.

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Primary Citation of related structures