8SWA image
Deposition Date 2023-05-18
Release Date 2023-11-15
Last Version Date 2023-11-15
Entry Detail
PDB ID:
8SWA
Keywords:
Title:
Crystal structure of the human S-adenosylmethionine synthetase 1 in complex with SAM and PPNP
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.19
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S-adenosylmethionine synthase isoform type-1
Gene (Uniprot):MAT1A
Chain IDs:A
Chain Length:403
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Formaldehyde regulates S -adenosylmethionine biosynthesis and one-carbon metabolism.
Science 382 eabp9201 eabp9201 (2023)
PMID: 37917677 DOI: 10.1126/science.abp9201

Abstact

One-carbon metabolism is an essential branch of cellular metabolism that intersects with epigenetic regulation. In this work, we show how formaldehyde (FA), a one-carbon unit derived from both endogenous sources and environmental exposure, regulates one-carbon metabolism by inhibiting the biosynthesis of S-adenosylmethionine (SAM), the major methyl donor in cells. FA reacts with privileged, hyperreactive cysteine sites in the proteome, including Cys120 in S-adenosylmethionine synthase isoform type-1 (MAT1A). FA exposure inhibited MAT1A activity and decreased SAM production with MAT-isoform specificity. A genetic mouse model of chronic FA overload showed a decrease n SAM and in methylation on selected histones and genes. Epigenetic and transcriptional regulation of Mat1a and related genes function as compensatory mechanisms for FA-dependent SAM depletion, revealing a biochemical feedback cycle between FA and SAM one-carbon units.

Legend

Protein

Chemical

Disease

Primary Citation of related structures