8ST8 image
Entry Detail
PDB ID:
8ST8
Keywords:
Title:
Structure of E3 ligase SopA bound to ubiquitin
Biological Source:
PDB Version:
Deposition Date:
2023-05-09
Release Date:
2023-07-12
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:E3 ubiquitin-protein ligase SopA
Chain IDs:A
Chain Length:197
Number of Molecules:1
Biological Source:Salmonella enterica subsp. enterica serovar Typhimurium
Polymer Type:polypeptide(L)
Description:Ubiquitin
Chain IDs:B
Chain Length:75
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Bacterial ligases reveal fundamental principles of polyubiquitin specificity.
Mol.Cell 83 4538 4554.e4 (2023)
PMID: 38091999 DOI: 10.1016/j.molcel.2023.11.017

Abstact

Homologous to E6AP C terminus (HECT) E3 ubiquitin (Ub) ligases direct substrates toward distinct cellular fates dictated by the specific form of monomeric or polymeric Ub (polyUb) signal attached. How polyUb specificity is achieved has been a long-standing mystery, despite extensive study in various hosts, ranging from yeast to human. The bacterial pathogens enterohemorrhagic Escherichia coli and Salmonella Typhimurium encode outlying examples of "HECT-like" (bHECT) E3 ligases, but commonalities to eukaryotic HECT (eHECT) mechanism and specificity had not been explored. We expanded the bHECT family with examples in human and plant pathogens. Three bHECT structures in primed, Ub-loaded states resolved key details of the entire Ub ligation process. One structure provided a rare glimpse into the act of ligating polyUb, yielding a means to rewire polyUb specificity of both bHECT and eHECT ligases. Studying this evolutionarily distinct bHECT family has revealed insight into the function of key bacterial virulence factors as well as fundamental principles underlying HECT-type Ub ligation.

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Primary Citation of related structures