8SL1 image
Deposition Date 2023-04-20
Release Date 2023-11-08
Last Version Date 2025-05-14
Entry Detail
PDB ID:
8SL1
Title:
Cryo-EM structure of PAPP-A2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.13 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Pappalysin-2
Gene (Uniprot):PAPPA2
Chain IDs:A
Chain Length:1570
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Cryo-EM structure of human PAPP-A2 and mechanism of substrate recognition.
Commun Chem 6 234 234 (2023)
PMID: 37898658 DOI: 10.1038/s42004-023-01032-y

Abstact

Pregnancy-Associated Plasma Protein A isoforms, PAPP-A and PAPP-A2, are metalloproteases that cleave insulin-like growth factor binding proteins (IGFBPs) to modulate insulin-like growth factor signaling. The structures of homodimeric PAPP-A in complex with IGFBP5 anchor peptide, and inhibitor proteins STC2 and proMBP have been recently reported. Here, we present the single-particle cryo-EM structure of the monomeric, N-terminal LG, MP, and the M1 domains (with the exception of LNR1/2) of human PAPP-A2 to 3.13 Å resolution. Our structure together with functional studies provides insight into a previously reported patient mutation that inactivates PAPP-A2 in a distal region of the protein. Using a combinational approach, we suggest that PAPP-A2 recognizes IGFBP5 in a similar manner as PAPP-A and show that PAPP-A2 cleaves IGFBP5 less efficiently due to differences in the M2 domain. Overall, our studies characterize the cleavage mechanism of IGFBP5 by PAPP-A2 and shed light onto key differences with its paralog PAPP-A.

Legend

Protein

Chemical

Disease

Primary Citation of related structures