8SKW image
Deposition Date 2023-04-20
Release Date 2023-08-16
Last Version Date 2023-12-20
Entry Detail
PDB ID:
8SKW
Keywords:
Title:
MicroED structure of d(CGCGCG)2 Z-DNA
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
Chain IDs:A (auth: B), B (auth: A)
Chain Length:6
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structure determination of a DNA crystal by MicroED.
Structure 31 1499 1503.e2 (2023)
PMID: 37541248 DOI: 10.1016/j.str.2023.07.005

Abstact

Microcrystal electron diffraction (MicroED) is a powerful tool for determining high-resolution structures of microcrystals from a diverse array of biomolecular, chemical, and material samples. In this study, we apply MicroED to DNA crystals, which have not been previously analyzed using this technique. We utilized the d(CGCGCG)2 DNA duplex as a model sample and employed cryo-FIB milling to create thin lamella for diffraction data collection. The MicroED data collection and subsequent processing resulted in a 1.10 Å resolution structure of the d(CGCGCG)2 DNA, demonstrating the successful application of cryo-FIB milling and MicroED to the investigation of nucleic acid crystals.

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Primary Citation of related structures
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