8SKM image
Entry Detail
PDB ID:
8SKM
Keywords:
Title:
Wild type chlorogenic acid esterase from Lactobacillus helveticus
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-20
Release Date:
2024-03-27
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Chlorogenic acid esterase
Chain IDs:A, B, C
Chain Length:252
Number of Molecules:3
Biological Source:Lactobacillus helveticus
Primary Citation
The structure of a Lactobacillus helveticus chlorogenic acid esterase and the dynamics of its insertion domain provide insights into substrate binding.
Febs Lett. 597 2946 2962 (2023)
PMID: 37698360 DOI: 10.1002/1873-3468.14731

Abstact

Chlorogenic acid esterases (ChlEs) are a useful class of enzymes that hydrolyze chlorogenic acid (CGA) into caffeic and quinic acids. ChlEs can break down CGA in foods to improve their sensory properties and release caffeic acid in the digestive system to improve the absorption of bioactive compounds. This work presents the structure, molecular dynamics, and biochemical characterization of a ChlE from Lactobacillus helveticus (Lh). Molecular dynamics simulations suggest that substrate access to the active site of LhChlE is modulated by two hairpin loops above the active site. Docking simulations and mutational analysis suggest that two residues within the loops, Gln145 and Lys164 , are important for CGA binding. Lys164 provides a slight substrate preference for CGA, whereas Gln145 is required for efficient turnover. This work is the first to examine the dynamics of a bacterial ChlE and provides insights on substrate binding preference and turnover in this type of enzyme.

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