8SJH image
Deposition Date 2023-04-18
Release Date 2023-07-05
Last Version Date 2024-05-22
Entry Detail
PDB ID:
8SJH
Keywords:
Title:
Zn-Bound Structure of Computationally Designed Homotrimer TP1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Topoisomerase 1
Chain IDs:A, B, C
Chain Length:114
Number of Molecules:3
Biological Source:synthetic construct
Primary Citation
Atomically Accurate Design of Metalloproteins with Predefined Coordination Geometries.
J.Am.Chem.Soc. 145 14208 14214 (2023)
PMID: 37352018 DOI: 10.1021/jacs.3c04047

Abstact

We report a new computational protein design method for the construction of oligomeric protein assemblies around metal centers with predefined coordination geometries. We apply this method to design two homotrimeric assemblies, Tet4 and TP1, with tetrahedral and trigonal-pyramidal tris(histidine) metal coordination geometries, respectively, and demonstrate that both assemblies form the targeted metal centers with ≤0.2 Å accuracy. Although Tet4 and TP1 are constructed from the same parent protein building block, they are distinct in terms of their overall architectures, the environment surrounding the metal centers, and their metal-based reactivities, illustrating the versatility of our approach.

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