8SJD image
Entry Detail
PDB ID:
8SJD
EMDB ID:
Title:
Cryo-EM structure of the Hermes transposase bound to two right-ends of its DNA transposon.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-17
Release Date:
2023-08-02
Method Details:
Experimental Method:
Resolution:
5.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hermes transposase
Mutations:Q2E,K128G
Chain IDs:A (auth: C), B (auth: D), C (auth: B), D (auth: A)
Chain Length:612
Number of Molecules:4
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Description:DNA (8-MER)
Chain IDs:H, I (auth: E)
Chain Length:7
Number of Molecules:2
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Description:DNA (46-MER)
Chain IDs:F (auth: I), J (auth: F)
Chain Length:46
Number of Molecules:2
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Description:DNA (55-MER)
Chain IDs:E (auth: J), G
Chain Length:55
Number of Molecules:2
Biological Source:Musca domestica
Ligand Molecules
Primary Citation
Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding.
Nat Commun 14 4470 4470 (2023)
PMID: 37491363 DOI: 10.1038/s41467-023-40210-3

Abstact

The Hermes DNA transposon is a member of the eukaryotic hAT superfamily, and its transposase forms a ring-shaped tetramer of dimers. Our investigation, combining biochemical, crystallography and cryo-electron microscopy, and in-cell assays, shows that the full-length Hermes octamer extensively interacts with its transposon left-end through multiple BED domains of three Hermes protomers contributed by three dimers explaining the role of the unusual higher-order assembly. By contrast, the right-end is bound to no BED domains at all. Thus, this work supports a model in which Hermes multimerizes to gather enough BED domains to find its left-end among the abundant genomic DNA, facilitating the subsequent interaction with the right-end.

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Primary Citation of related structures