8SJ4 image
Entry Detail
PDB ID:
8SJ4
Keywords:
Title:
8F3-1H9-Ara h 6
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-17
Release Date:
2024-12-25
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Conglutin
Chain IDs:E (auth: A)
Chain Length:122
Number of Molecules:1
Biological Source:Arachis hypogaea
Polymer Type:polypeptide(L)
Description:8F3 light chain kappa
Chain IDs:C (auth: D)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:8F3 heavy chain
Chain IDs:D (auth: F)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:1H9 heavy chain
Chain IDs:A (auth: H)
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:1H9 light chain kappa
Chain IDs:B (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural determinants of peanut induced anaphylaxis.
J.Allergy Clin.Immunol. ? ? ? (2025)
PMID: 39805366 DOI: 10.1016/j.jaci.2024.12.1095

Abstact

BACKGROUND Human IgE mAbs recognizing peanut allergens have recently become available, but we lack a detailed understanding of how these IgEs target allergens. OBJECTIVE We sought to determine the molecular details of the antibody-allergen interaction for a panel of clinically important human IgE mAbs and to develop strategies to disrupt disease causing antibody-allergen interactions. METHODS We identified candidates from a panel of epitope binned human IgE mAbs that recognize 2 important and homologous peanut allergens, Ara h 2 and Ara h 6. Crystal structures were determined revealing the interfaces (antigenic sites) of exemplars of 5 common IgE bins. RESULTS Among the common antigenic sites on Ara h 2 and Ara h 6, 2 sites (A and B) are highly conserved between the allergens, explaining the cross-reactivity of antibodies that recognize these sites. Three sites (C, D, and F) involve residues that are not conserved between the allergens. Of the 5 common sites, 3 sites (B, C, and D) involve residues that are near each other only when the allergens are properly folded, such that these sites are conformational. Two additional sites (sites A and F) involve largely linear stretches of amino acids. Site F targeted antibody, 38B7, binds to a peptide sequence DPYSPOHS, in which hydroxylation of the last proline is critical for binding. This sequence is repeated 2 or 3 times depending on the Ara h 2 isoform, enabling 38B7 to induce anaphylaxis as a single mAb, without a second antibody. We have mutated key residues in each site and created a panel of hypoallergens, having reduced IgE mAb binding and lacking the ability to induce anaphylaxis in our murine model. CONCLUSION We created a structural map of the IgE antibody response to the most important peanut allergen proteins to enable the design of new allergy immunotherapies and vaccines.

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