ISDA

Entry Detail

PDB ID:

8SIT

Keywords:

IMMUNE SYSTEM

Title:

Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with broadly neutralizing antibody CC84.24 Fab

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2, Homo sapiens

Host Organism:

Trichoplusia ni

PDB Version:

Deposition Date:

2023-04-16

Release Date:

2024-03-13

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.91 Å

R-Value Free:

0.30

R-Value Work:

0.26

R-Value Observed:

0.26

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Spike protein S1
Chain IDs:A, B, C, D
Chain Length:205
Number of Molecules:4
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Polymer Type:polypeptide(L)
Description:CC84.24 fab heavy chain
Chain IDs:E (auth: H), G (auth: M), I (auth: O), K (auth: Q)
Chain Length:231
Number of Molecules:4
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Description:CC84.24 fab light chain
Chain IDs:F (auth: L), H (auth: N), J (auth: P), L (auth: S)
Chain Length:214
Number of Molecules:4
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift

Song, G, Yuan, M, Liu, H, Capozzola, T, Lin, R, Torres, J, He, W, Musharrafieh, R, Dueker, K, Zhou, P, Callaghan, S, Mishra, N, Yong, P, Anzanello, F, Avillion, G, Vo, A, Li, X, Makhdoomi, M, Feng, Z, Zhu, X, Peng, L, Nemazee, D, Safonova, Y, Briney, B, Ward, A, Burton, D, Wilson, I, Andrabi, R.Show

Biorxiv ? ? ? (2023)

DOI: 10.1101/2023.04.26.538488

Primary Citation of related structures