ISDA

Deposition Date 2023-04-12

Release Date 2024-04-24

Last Version Date 2024-10-23

Entry Detail

PDB ID:

8SGM

Keywords:

IMMUNE SYSTEM

Title:

Crystal Structure of CD1d-lipid complexed with Beta-2-Microglobulin, TCR Alpha-Chain and TCR Beta-Chain

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.23

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 41

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antigen-presenting glycoprotein CD1d
Gene (Uniprot):CD1D
Chain IDs:A
Chain Length:274
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P15813 Pfam ID:PF16497, PF07654

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P61769 Pfam ID:PF07654

Polymer Type:polypeptide(L)
Molecule:Natural killer T cell receptor TRAV26-2
Chain IDs:C
Chain Length:207
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Natural killer T cell receptor TRBV19 beta chain
Chain IDs:D
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules