8SF8 image
Entry Detail
PDB ID:
8SF8
Title:
Structure of bovine PKA bound to (R)-N-(4-(1H-pyrrolo[2,3-b]pyridin-4-yl)phenyl)-2-amino-4-methylpentanamide
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-04-10
Release Date:
2024-02-21
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:cAMP-dependent protein kinase catalytic subunit alpha
Chain IDs:A
Chain Length:353
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:cAMP-dependent protein kinase inhibitor alpha
Chain IDs:B
Chain Length:20
Number of Molecules:1
Biological Source:Bos taurus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP A SER modified residue
TPO A THR modified residue
Ligand Molecules
Primary Citation
Discovery and Characterization of Selective, First-in-Class Inhibitors of Citron Kinase.
J.Med.Chem. 67 2631 2666 (2024)
PMID: 38330278 DOI: 10.1021/acs.jmedchem.3c01807

Abstact

Citron kinase (CITK) is an AGC-family serine/threonine kinase that regulates cytokinesis. Despite knockdown experiments implicating CITK as an anticancer target, no selective CITK inhibitors exist. We transformed a previously reported kinase inhibitor with weak off-target CITK activity into a first-in-class CITK chemical probe, C3TD879. C3TD879 is a Type I kinase inhibitor which potently inhibits CITK catalytic activity (biochemical IC50 = 12 nM), binds directly to full-length human CITK in cells (NanoBRET Kd < 10 nM), and demonstrates favorable DMPK properties for in vivo evaluation. We engineered exquisite selectivity for CITK (>17-fold versus 373 other human kinases), making C3TD879 the first chemical probe suitable for interrogating the complex biology of CITK. Our small-molecule CITK inhibitors could not phenocopy the effects of CITK knockdown in cell proliferation, cell cycle progression, or cytokinesis assays, providing preliminary evidence that the structural roles of CITK may be more important than its kinase activity.

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Primary Citation of related structures