ISDA

Deposition Date 2023-04-10

Release Date 2024-05-22

Last Version Date 2024-10-09

Entry Detail

PDB ID:

8SF7

Keywords:

STRUCTURAL PROTEIN

Title:

48-nm doublet microtubule from Tetrahymena thermophila strain MEC17

Biological Source:

Source Organism:

Tetrahymena thermophila (Taxon ID: 5911)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.10 Å

Aggregation State:

CELL

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB27A
Gene (Uniprot):TTHERM_00522810
Chain IDs:B (auth: 0A), Q (auth: 1A), OA (auth: 2A), LB (auth: 3A)
Chain Length:236
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:I7LUL4

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB38
Gene (Uniprot):TTHERM_00758860
Chain IDs:C (auth: 0B)
Chain Length:329
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:Q23JL9

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAM166B
Gene (Uniprot):TTHERM_01052990
Chain IDs:D (auth: 0C), S (auth: 1C)
Chain Length:156
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:Q235M9 Pfam ID:PF10629

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAM166A
Gene (Uniprot):TTHERM_00449470
Chain IDs:E (auth: 0D), T (auth: 1D), RA (auth: 2D)
Chain Length:225
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:Q238X3 Pfam ID:PF10629

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB22
Gene (Uniprot):TTHERM_00691900
Chain IDs:F (auth: 0E), U (auth: 1E), SA (auth: 2E), PB (auth: 3E)
Chain Length:191
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:I7LT67 Pfam ID:PF13499

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAM166C
Gene (Uniprot):TTHERM_01109800
Chain IDs:G (auth: 0F)
Chain Length:219
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:Q22B75

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP107
Gene (Uniprot):TTHERM_00320040
Chain IDs:H (auth: 0G), W (auth: 1G)
Chain Length:183
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:Q237T1

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP127
Gene (Uniprot):TTHERM_00338110
Chain IDs:I (auth: 0H), X (auth: 1H)
Chain Length:447
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:I7LV70 Pfam ID:PF13868

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP161A
Gene (Uniprot):TTHERM_00155380
Chain IDs:J (auth: 0N), DA (auth: 1N), AB (auth: 2N)
Chain Length:492
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:Q22WJ6

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP20
Gene (Uniprot):TTHERM_00418580
Chain IDs:K (auth: 0Q), GA (auth: 1Q), DB (auth: 2Q), UB (auth: 3Q), EC (auth: 4Q), TC (auth: 5Q), YC (auth: 6Q)
Chain Length:195
Number of Molecules:7
Biological Source:Tetrahymena thermophila

UniProt ID:Q22NU3 Pfam ID:PF05018

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Parkin co-regulated protein PACRGA
Gene (Uniprot):TTHERM_00446290
Chain IDs:L (auth: 0S), IA (auth: 1S), FB (auth: 2S), WB (auth: 3S)
Chain Length:319
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:I7MLV6 Pfam ID:PF10274

Protein Blast

Polymer Type:polypeptide(L)
Molecule:IJ34
Gene (Uniprot):TTHERM_00348390
Chain IDs:M (auth: 0T), JA (auth: 1T), GB (auth: 2T), XB (auth: 3T)
Chain Length:298
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:I7M9T0 Pfam ID:PF14908, PF18289

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cilia- and flagella-associated protein 52
Gene (Uniprot):TTHERM_01094880
Chain IDs:N (auth: 0U), KA (auth: 1U), HB (auth: 2U), YB (auth: 3U)
Chain Length:656
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:Q22ZH2 Pfam ID:PF00400

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase delta C4-type zinc-finger protein
Gene (Uniprot):TTHERM_00137550
Chain IDs:O (auth: 0V), LA (auth: 1V), IB (auth: 2V), ZB (auth: 3V)
Chain Length:269
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:I7M279 Pfam ID:PF13864

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB43A protein
Gene (Uniprot):TTHERM_00641119
Chain IDs:P (auth: 0X), NA (auth: 1X), KB (auth: 2X), AC (auth: 3X), HC (auth: 4X)
Chain Length:142
Number of Molecules:5
Biological Source:Tetrahymena thermophila

UniProt ID:A4VDZ5 Pfam ID:PF05914

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB57
Gene (Uniprot):TTHERM_00406590
Chain IDs:R (auth: 1B), PA (auth: 2B), MB (auth: 3B)
Chain Length:498
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:I7ME23 Pfam ID:PF13499, PF13833

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP182A
Gene (Uniprot):TTHERM_01049330
Chain IDs:V (auth: 1F)
Chain Length:173
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:Q24BV4 Pfam ID:PF14892

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP143
Gene (Uniprot):TTHERM_00502359
Chain IDs:Y (auth: 1I)
Chain Length:263
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:A4VD56

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP21A
Gene (Uniprot):TTHERM_00494280
Chain IDs:Z (auth: 1J)
Chain Length:422
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:I7MLS4

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cilia- and flagella-associated protein 53
Gene (Uniprot):TTHERM_01207630
Chain IDs:AA (auth: 1K), XA (auth: 2K)
Chain Length:489
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:Q23YQ8 Pfam ID:PF13868

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP115
Gene (Uniprot):TTHERM_00193760
Chain IDs:BA (auth: 1L), YA (auth: 2L), SB (auth: 3L)
Chain Length:940
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:Q23KF9

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nucleoside diphosphate kinase
Gene (Uniprot):TTHERM_000372529
Chain IDs:CA (auth: 1M), ZA (auth: 2M)
Chain Length:372
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:W7XGD1 Pfam ID:PF00334

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cilia- and flagella-associated protein 45
Gene (Uniprot):TTHERM_001164064
Chain IDs:EA (auth: 1O), BB (auth: 2O), TB (auth: 3O)
Chain Length:494
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:W7XCX2 Pfam ID:PF13868

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP210
Gene (Uniprot):TTHERM_00643530
Chain IDs:FA (auth: 1P), CB (auth: 2P)
Chain Length:507
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:Q23EX8 Pfam ID:PF13868

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB72B
Gene (Uniprot):TTHERM_00584850
Chain IDs:HA (auth: 1R), EB (auth: 2R), VB (auth: 3R)
Chain Length:516
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:I7MCU1 Pfam ID:PF06565

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protofilament ribbon protein
Gene (Uniprot):TTHERM_00624660
Chain IDs:MA (auth: 1W), JB (auth: 2W)
Chain Length:280
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:Q240R7 Pfam ID:PF05914

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB35
Gene (Uniprot):TTHERM_00267880
Chain IDs:QA (auth: 2C), NB (auth: 3C), BC (auth: 4C)
Chain Length:300
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:I7ME81 Pfam ID:PF13499

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP182B
Gene (Uniprot):TTHERM_00535210
Chain IDs:TA (auth: 2F)
Chain Length:96
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:I7MLW3 Pfam ID:PF14892

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Flagellar FliJ protein
Gene (Uniprot):TTHERM_00242188
Chain IDs:UA (auth: 2G)
Chain Length:99
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:A4VCU8 Pfam ID:PF15104

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB27B
Gene (Uniprot):TTHERM_01016050
Chain IDs:VA (auth: 2H), QB (auth: 3H), DC (auth: 4H)
Chain Length:229
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:Q22CT6

Protein Blast

Polymer Type:polypeptide(L)
Molecule:STPG2
Gene (Uniprot):TTHERM_00218910
Chain IDs:WA (auth: 2I), RB (auth: 3I)
Chain Length:293
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:I7M2G0 Pfam ID:PF07004

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RIB26
Gene (Uniprot):TTHERM_00594110
Chain IDs:OB (auth: 3D)
Chain Length:237
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:Q232I6 Pfam ID:PF01738

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP129
Gene (Uniprot):TTHERM_00565590
Chain IDs:CC (auth: 4F)
Chain Length:276
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:I7M9I4

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Flagellar microtugule protofilament ribbon protein
Gene (Uniprot):TTHERM_00143690
Chain IDs:FC (auth: 4R), UC (auth: 5R), ZC (auth: 6R), AD (auth: 7R)
Chain Length:613
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:I7M0S7 Pfam ID:PF06565

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Parkin co-regulated protein PACRGB
Gene (Uniprot):TTHERM_00499570
Chain IDs:GC (auth: 4S), VC (auth: 5S)
Chain Length:249
Number of Molecules:2
Biological Source:Tetrahymena thermophila

UniProt ID:I7M317 Pfam ID:PF10274

Protein Blast

Polymer Type:polypeptide(L)
Molecule:OJ2
Gene (Uniprot):TTHERM_00086850
Chain IDs:IC (auth: 5A), JC (auth: 5B), KC (auth: 5C), LC (auth: 5D)
Chain Length:175
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:Q236L2

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CFAP77A
Gene (Uniprot):TTHERM_00974270
Chain IDs:MC (auth: 5E), NC (auth: 5F), OC (auth: 5G), PC (auth: 5H)
Chain Length:247
Number of Molecules:4
Biological Source:Tetrahymena thermophila

UniProt ID:Q22WR6 Pfam ID:PF14825

Protein Blast

Polymer Type:polypeptide(L)
Molecule:OJ3
Gene (Uniprot):TTHERM_00220800
Chain IDs:QC (auth: 5I), RC (auth: 5J), SC (auth: 5K)
Chain Length:168
Number of Molecules:3
Biological Source:Tetrahymena thermophila

UniProt ID:I7MFP6 Pfam ID:PF14886

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SB1
Gene (Uniprot):TTHERM_00433450
Chain IDs:WC (auth: 6F)
Chain Length:145
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:Q231B2

Protein Blast

Polymer Type:polypeptide(L)
Molecule:STPG1A
Gene (Uniprot):TTHERM_00724700
Chain IDs:XC (auth: 6G)
Chain Length:364
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:Q24GM1 Pfam ID:PF07004

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nebulin
Gene (Uniprot):TTHERM_00433410
Chain IDs:A (auth: 6H)
Chain Length:518
Number of Molecules:1
Biological Source:Tetrahymena thermophila

UniProt ID:Q231B6

Polymer Type:polypeptide(L)
Molecule:CFAP112B
Chain IDs:BD (auth: 8L), CD (auth: 8N)
Chain Length:385
Number of Molecules:2
Biological Source:Tetrahymena thermophila

Polymer Type:polypeptide(L)
Molecule:CFAP112A
Chain IDs:DD (auth: 8P), ED (auth: 8R)
Chain Length:363
Number of Molecules:2
Biological Source:Tetrahymena thermophila

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tubulin alpha chain
Chain IDs:FD (auth: AA), HD (auth: AC), JD (auth: AE), LD (auth: AG), ND (auth: AI), PD (auth: AK), RD (auth: AM), TD (auth: BA), VD (auth: BC), XD (auth: BE), ZD (auth: BG), BE (auth: BI), DE (auth: BK), FE (auth: BM), HE (auth: CA), JE (auth: CC), LE (auth: CE), NE (auth: CG), PE (auth: CI), RE (auth: CK), TE (auth: CM), VE (auth: DA), XE (auth: DC), ZE (auth: DE), BF (auth: DG), DF (auth: DI), FF (auth: DK), HF (auth: DM), JF (auth: EA), LF (auth: EC), NF (auth: EE), PF (auth: EG), RF (auth: EI), TF (auth: EK), VF (auth: EM), XF (auth: FA), ZF (auth: FC), BG (auth: FE), DG (auth: FG), FG (auth: FI), HG (auth: FK), JG (auth: FM), LG (auth: GA), NG (auth: GC), PG (auth: GE), RG (auth: GG), TG (auth: GI), VG (auth: GK), XG (auth: GM), ZG (auth: HA), BH (auth: HC), DH (auth: HE), FH (auth: HG), HH (auth: HI), JH (auth: HK), LH (auth: HM), NH (auth: IA), PH (auth: IC), RH (auth: IE), TH (auth: IG), VH (auth: II), XH (auth: IK), ZH (auth: IM), BI (auth: JA), DI (auth: JC), FI (auth: JE), HI (auth: JG), JI, LI (auth: JK), NI (auth: JM), PI (auth: KA), RI (auth: KC), TI (auth: KE), VI (auth: KG), XI (auth: KI), ZI (auth: KK), BJ (auth: KM), DJ (auth: LA), FJ (auth: LC), HJ (auth: LE), JJ (auth: LG), LJ (auth: LI), NJ (auth: LK), PJ (auth: LM), RJ (auth: MA), TJ (auth: MC), VJ (auth: ME), XJ (auth: MG), ZJ (auth: MI), BK (auth: MK), DK (auth: MM), FK (auth: NA), HK (auth: NC), JK (auth: NE), LK (auth: NG), NK (auth: NI), PK (auth: NK), RK (auth: NM), TK (auth: OA), VK (auth: OC), XK (auth: OE), ZK (auth: OG), BL (auth: OI), DL (auth: OK), FL (auth: OM), HL (auth: PA), JL (auth: PC), LL (auth: PE), NL (auth: PG), PL (auth: PI), RL (auth: PK), TL (auth: PM), VL (auth: QA), XL (auth: QC), ZL (auth: QE), BM (auth: QG), DM (auth: QI), FM (auth: QK), HM (auth: QM), JM (auth: RA), LM (auth: RC), NM (auth: RE), PM (auth: RG), RM (auth: RI), TM (auth: RK), VM (auth: RM), XM (auth: SA), ZM (auth: SC), BN (auth: SE), DN (auth: SG), FN (auth: SI), HN (auth: SK), JN (auth: SM), LN (auth: TA), NN (auth: TC), PN (auth: TE), RN (auth: TG), TN (auth: TI), VN (auth: TK), XN (auth: TM), ZN (auth: UA), BO (auth: UC), DO (auth: UE), FO (auth: UG), HO (auth: UI), JO (auth: UK), LO (auth: UM), NO (auth: VA), PO (auth: VC), RO (auth: VE), TO (auth: VG), VO (auth: VI), XO (auth: VK), ZO (auth: VM), BP (auth: WA), DP (auth: WC), FP (auth: WE), HP (auth: WG), JP (auth: WI), LP (auth: WK), NP (auth: WM)
Chain Length:449
Number of Molecules:161
Biological Source:Tetrahymena thermophila

UniProt ID:P41351 Pfam ID:PF00091, PF03953

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Gene (Uniprot):BTU1, BTU2
Chain IDs:GD (auth: AB), ID (auth: AD), KD (auth: AF), MD (auth: AH), OD (auth: AJ), QD (auth: AL), SD (auth: AN), UD (auth: BB), WD (auth: BD), YD (auth: BF), AE (auth: BH), CE (auth: BJ), EE (auth: BL), GE (auth: BN), IE (auth: CB), KE (auth: CD), ME (auth: CF), OE (auth: CH), QE (auth: CJ), SE (auth: CL), UE (auth: CN), WE (auth: DB), YE (auth: DD), AF (auth: DF), CF (auth: DH), EF (auth: DJ), GF (auth: DL), IF (auth: DN), KF (auth: EB), MF (auth: ED), OF (auth: EF), QF (auth: EH), SF (auth: EJ), UF (auth: EL), WF (auth: EN), YF (auth: FB), AG (auth: FD), CG (auth: FF), EG (auth: FH), GG (auth: FJ), IG (auth: FL), KG (auth: FN), MG (auth: GB), OG (auth: GD), QG (auth: GF), SG (auth: GH), UG (auth: GJ), WG (auth: GL), YG (auth: GN), AH (auth: HB), CH (auth: HD), EH (auth: HF), GH (auth: HH), IH (auth: HJ), KH (auth: HL), MH (auth: HN), OH (auth: IB), QH (auth: ID), SH (auth: IF), UH (auth: IH), WH (auth: IJ), YH (auth: IL), AI (auth: IN), CI (auth: JB), EI (auth: JD), GI (auth: JF), II (auth: JH), KI (auth: JJ), MI (auth: JL), OI (auth: JN), QI (auth: KB), SI (auth: KD), UI (auth: KF), WI (auth: KH), YI (auth: KJ), AJ (auth: KL), CJ (auth: KN), EJ (auth: LB), GJ (auth: LD), IJ (auth: LF), KJ (auth: LH), MJ (auth: LJ), OJ (auth: LL), QJ (auth: LN), SJ (auth: MB), UJ (auth: MD), WJ (auth: MF), YJ (auth: MH), AK (auth: MJ), CK (auth: ML), EK (auth: MN), GK (auth: NB), IK (auth: ND), KK (auth: NF), MK (auth: NH), OK (auth: NJ), QK (auth: NL), SK (auth: NN), UK (auth: OB), WK (auth: OD), YK (auth: OF), AL (auth: OH), CL (auth: OJ), EL (auth: OL), GL (auth: ON), IL (auth: PB), KL (auth: PD), ML (auth: PF), OL (auth: PH), QL (auth: PJ), SL (auth: PL), UL (auth: PN), WL (auth: QB), YL (auth: QD), AM (auth: QF), CM (auth: QH), EM (auth: QJ), GM (auth: QL), IM (auth: QN), KM (auth: RB), MM (auth: RD), OM (auth: RF), QM (auth: RH), SM (auth: RJ), UM (auth: RL), WM (auth: RN), YM (auth: SB), AN (auth: SD), CN (auth: SF), EN (auth: SH), GN (auth: SJ), IN (auth: SL), KN (auth: SN), MN (auth: TB), ON (auth: TD), QN (auth: TF), SN (auth: TH), UN (auth: TJ), WN (auth: TL), YN (auth: TN), AO (auth: UB), CO (auth: UD), EO (auth: UF), GO (auth: UH), IO (auth: UJ), KO (auth: UL), MO (auth: UN), OO (auth: VB), QO (auth: VD), SO (auth: VF), UO (auth: VH), WO (auth: VJ), YO (auth: VL), AP (auth: VN), CP (auth: WB), EP (auth: WD), GP (auth: WF), IP (auth: WH), KP (auth: WJ), MP (auth: WL), OP (auth: WN)
Chain Length:443
Number of Molecules:161
Biological Source:Tetrahymena thermophila

UniProt ID:P41352 Pfam ID:PF00091, PF03953

Ligand Molecules

GDP

GTP

Primary Citation

Effect of alpha-tubulin acetylation on the doublet microtubule structure.

Yang, S.K, Kubo, S, Black, C.S, Peri, K, Dai, D, Legal, T, Valente-Paterno, M, Gaertig, J, Bui, K.H.Show

Elife 12 ? ? (2024)

PMID: 38598282 DOI: 10.7554/eLife.92219

Abstact

Acetylation of α-tubulin at the lysine 40 residue (αK40) by αTAT1/MEC-17 acetyltransferase modulates microtubule properties and occurs in most eukaryotic cells. Previous literatures suggest that acetylated microtubules are more stable and damage resistant. αK40 acetylation is the only known microtubule luminal post-translational modification site. The luminal location suggests that the modification tunes the lateral interaction of protofilaments inside the microtubule. In this study, we examined the effect of tubulin acetylation on the doublet microtubule (DMT) in the cilia of Tetrahymena thermophila using a combination of cryo-electron microscopy, molecular dynamics, and mass spectrometry. We found that αK40 acetylation exerts a small-scale effect on the DMT structure and stability by influencing the lateral rotational angle. In addition, comparative mass spectrometry revealed a link between αK40 acetylation and phosphorylation in cilia.

Legend

Protein

Chemical

Disease

Primary Citation of related structures