8SEP image
Entry Detail
PDB ID:
8SEP
EMDB ID:
Title:
Cryo-EM Structure of RyR1 + ADP
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-04-10
Release Date:
2023-05-24
Method Details:
Experimental Method:
Resolution:
3.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ryanodine receptor 1
Chain IDs:A, B, C, D
Chain Length:5037
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B
Chain IDs:E, F, G, H
Chain Length:350
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Allosteric modulation of ryanodine receptor RyR1 by nucleotide derivatives.
Structure 31 790 800.e4 (2023)
PMID: 37192614 DOI: 10.1016/j.str.2023.04.009

Abstact

The coordinated release of Ca2+ from the sarcoplasmic reticulum (SR) is critical for excitation-contraction coupling. This release is facilitated by ryanodine receptors (RyRs) that are embedded in the SR membrane. In skeletal muscle, activity of RyR1 is regulated by metabolites such as ATP, which upon binding increase channel open probability (Po). To obtain structural insights into the mechanism of RyR1 priming by ATP, we determined several cryo-EM structures of RyR1 bound individually to ATP-γ-S, ADP, AMP, adenosine, adenine, and cAMP. We demonstrate that adenine and adenosine bind RyR1, but AMP is the smallest ATP derivative capable of inducing long-range (>170 Å) structural rearrangements associated with channel activation, establishing a structural basis for key binding site interactions that are the threshold for triggering quaternary structural changes. Our finding that cAMP also induces these structural changes and results in increased channel opening suggests its potential role as an endogenous modulator of RyR1 conductance.

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