8SDZ image
Deposition Date 2023-04-07
Release Date 2023-10-18
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8SDZ
Title:
Structure of rat organic anion transporter 1 (OAT1) in complex with probenecid
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.86 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 22 member 6
Gene (Uniprot):Slc22a6
Chain IDs:A
Chain Length:551
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
The substrate and inhibitor binding mechanism of polyspecific transporter OAT1 revealed by high-resolution cryo-EM.
Nat.Struct.Mol.Biol. 30 1794 1805 (2023)
PMID: 37845412 DOI: 10.1038/s41594-023-01123-3

Abstact

Organic anion transporters (OATs) of the SLC22 family have crucial roles in the transport of organic anions, including metabolites and therapeutic drugs, and in transporter-mediated drug-drug interactions. In the kidneys, OATs facilitate the elimination of metabolic waste products and xenobiotics. However, their transport activities can lead to the accumulation of certain toxic compounds within cells, causing kidney damage. Moreover, OATs are important drug targets, because their inhibition modulates the elimination or retention of substrates linked to diseases. Despite extensive research on OATs, the molecular basis of their substrate and inhibitor binding remains poorly understood. Here we report the cryo-EM structures of rat OAT1 (also known as SLC22A6) and its complexes with para-aminohippuric acid and probenecid at 2.1, 2.8 and 2.9 Å resolution, respectively. Our findings reveal a highly conserved substrate binding mechanism for SLC22 transporters, wherein four aromatic residues form a cage to accommodate the polyspecific binding of diverse compounds.

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Primary Citation of related structures