8SDK image
Deposition Date 2023-04-06
Release Date 2023-05-31
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8SDK
Keywords:
Title:
The MicroED structure of proteinase K crystallized by suspended drop crystallization
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Proteinase K
Gene (Uniprot):PROK
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Parengyodontium album
Primary Citation
Design and implementation of suspended drop crystallization.
Iucrj 10 430 436 (2023)
PMID: 37223996 DOI: 10.1107/S2052252523004141

Abstact

In this work, a novel crystal growth method termed suspended drop crystallization has been developed. Unlike traditional methods, this technique involves mixing protein and precipitant directly on an electron microscopy grid without any additional support layers. The grid is then suspended within a crystallization chamber designed in-house, allowing for vapor diffusion to occur from both sides of the drop. A UV-transparent window above and below the grid enables the monitoring of crystal growth via light, UV or fluorescence microscopy. Once crystals have formed, the grid can be removed and utilized for X-ray crystallography or microcrystal electron diffraction (MicroED) directly without having to manipulate the crystals. To demonstrate the efficacy of this method, crystals of the enzyme proteinase K were grown and its structure was determined by MicroED following focused ion beam/scanning electron microscopy milling to render the sample thin enough for cryoEM. Suspended drop crystallization overcomes many of the challenges associated with sample preparation, providing an alternative workflow for crystals embedded in viscous media, sensitive to mechanical stress and/or subject to preferred orientation on electron microscopy grids.

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Primary Citation of related structures