8SDF image
Deposition Date 2023-04-06
Release Date 2024-03-13
Last Version Date 2025-07-16
Entry Detail
PDB ID:
8SDF
Keywords:
IMMUNE SYSTEM
Title:
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC25.4
Biological Source:
Source Organism(s):
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Trichoplusia ni, Homo sapiens
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.79 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
8SDF validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neutralizing antibody CC25.4 heavy chain
Chain IDs:B (auth: H), E (auth: B)
Chain Length:229
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Neutralizing antibody CC25.4 light chain
Chain IDs:C (auth: L), F (auth: C)
Chain Length:217
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A (auth: Z), D (auth: A)
Chain Length:205
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF09408
Ligand Molecules
MPD
NAG
Primary Citation
Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift
Cell Rep 44 115948 ? (2025)
DOI: 10.1016/j.celrep.2025.115948
Primary Citation of related structures
8SDF
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