8S4T image
Deposition Date 2024-02-22
Release Date 2024-05-29
Last Version Date 2024-07-03
Entry Detail
PDB ID:
8S4T
Title:
DNA bound structure of PrgE from plasmid pCF10
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PrgE
Gene (Uniprot):prgK
Chain IDs:A, B, C
Chain Length:145
Number of Molecules:3
Biological Source:Enterococcus faecalis
Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:D
Chain Length:60
Number of Molecules:1
Biological Source:DNA molecule
Ligand Molecules
Primary Citation
PrgE: an OB-fold protein from plasmid pCF10 with striking differences to prototypical bacterial SSBs.
Life Sci Alliance 7 ? ? (2024)
PMID: 38811160 DOI: 10.26508/lsa.202402693

Abstact

A major pathway for horizontal gene transfer is the transmission of DNA from donor to recipient cells via plasmid-encoded type IV secretion systems (T4SSs). Many conjugative plasmids encode for a single-stranded DNA-binding protein (SSB) together with their T4SS. Some of these SSBs have been suggested to aid in establishing the plasmid in the recipient cell, but for many, their function remains unclear. Here, we characterize PrgE, a proposed SSB from the Enterococcus faecalis plasmid pCF10. We show that PrgE is not essential for conjugation. Structurally, it has the characteristic OB-fold of SSBs, but it has very unusual DNA-binding properties. Our DNA-bound structure shows that PrgE binds ssDNA like beads on a string supported by its N-terminal tail. In vitro studies highlight the plasticity of PrgE oligomerization and confirm the importance of the N-terminus. Unlike other SSBs, PrgE binds both double- and single-stranded DNA equally well. This shows that PrgE has a quaternary assembly and DNA-binding properties that are very different from the prototypical bacterial SSB, but also different from eukaryotic SSBs.

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Primary Citation of related structures