8S4E image
Deposition Date 2024-02-21
Release Date 2025-01-15
Last Version Date 2025-01-15
Entry Detail
PDB ID:
8S4E
Keywords:
Title:
Dimeric Alpha-beta barrel protein from Brassica rapa subsp.pekinensis
Biological Source:
Source Organism:
Brassica rapa (Taxon ID: 3711)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.98 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome assembly, chromosome: A10
Gene (Uniprot):BRAA10T43907Z, BRAPAZ1V2_A10P19140.2, BRARA_J01461
Chain IDs:A, B
Chain Length:124
Number of Molecules:2
Biological Source:Brassica rapa
Primary Citation
SilE-R and SilE-S-DABB Proteins Catalying Enantiospecific Hydrolysis of Organosilyl Ethers.
Angew.Chem.Int.Ed.Engl. 63 e202404105 e202404105 (2024)
PMID: 38630059 DOI: 10.1002/anie.202404105

Abstact

Silyl ethers fulfil a fundamental role in synthetic organic chemistry as protecting groups and their selective cleavage is an important factor in their application. We present here for the first time two enzymes, SilE-R and SilE-S, which are able to hydrolyse silyl ethers. They belong to the stress-response dimeric A/B barrel domain (DABB) family and are able to cleave the Si-O bond with opposite enantiopreference. Silyl ethers containing aromatic, cyclic or aliphatic alcohols and, depending on the alcohol moiety, silyl functions as large as TBDMS are accepted. The X-ray crystal structure of SilE-R, determined to a resolution of 1.98 Å, in combination with mutational studies, revealed an active site featuring two histidine residues, H8 and H79, which likely act synergistically as nucleophile and Brønsted base in the hydrolytic mechanism, which has not previously been described for enzymes. Although the natural function of SilE-R and SilE-S is unknown, we propose that these 'silyl etherases' may have significant potential for synthetic applications.

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Primary Citation of related structures