8RVR image
Entry Detail
PDB ID:
8RVR
Keywords:
Title:
Crystal structure of Trypanosoma congolense pyruvate kinase in complex with a single-domain antibody (TcoPYK-sdAb42) in the presence of sulfate
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-02-02
Release Date:
2025-04-16
Method Details:
Experimental Method:
Resolution:
3.19 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvate kinase
Chain IDs:A, B, C, D, E, F
Chain Length:514
Number of Molecules:6
Biological Source:Trypanosoma congolense
Polymer Type:polypeptide(L)
Description:Camelid single-domain antibody 42 (sdAb42)
Chain IDs:G, H, I, J, K, L
Chain Length:149
Number of Molecules:6
Biological Source:Vicugna pacos
Primary Citation
Allosteric inhibition of trypanosomatid pyruvate kinases by a camelid single-domain antibody.
Elife 13 ? ? (2025)
PMID: 40163365 DOI: 10.7554/eLife.100066

Abstact

African trypanosomes are the causative agents of neglected tropical diseases affecting both humans and livestock. Disease control is highly challenging due to an increasing number of drug treatment failures. African trypanosomes are extracellular, blood-borne parasites that mainly rely on glycolysis for their energy metabolism within the mammalian host. Trypanosomal glycolytic enzymes are therefore of interest for the development of trypanocidal drugs. Here, we report the serendipitous discovery of a camelid single-domain antibody (sdAb aka Nanobody) that selectively inhibits the enzymatic activity of trypanosomatid (but not host) pyruvate kinases through an allosteric mechanism. By combining enzyme kinetics, biophysics, structural biology, and transgenic parasite survival assays, we provide a proof-of-principle that the sdAb-mediated enzyme inhibition negatively impacts parasite fitness and growth.

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