8RVE image
Deposition Date 2024-02-01
Release Date 2024-04-10
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8RVE
Title:
Vimentin intermediate filament
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
7.20 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vimentin
Gene (Uniprot):VIM
Chain IDs:A (auth: 0), B (auth: 1), C (auth: 2), D (auth: 3), E (auth: 4), F (auth: 5), G (auth: 6), H (auth: 7), I (auth: 8), J (auth: 9), K (auth: A), L (auth: AA), M (auth: AB), N (auth: AC), O (auth: AD), P (auth: AE), Q (auth: AF), R (auth: AG), S (auth: AH), T (auth: AI), U (auth: AJ), V (auth: AK), W (auth: AL), X (auth: AM), Y (auth: AN), Z (auth: AO), AA (auth: AP), BA (auth: B), CA (auth: C), DA (auth: D), EA (auth: E), FA (auth: F), GA (auth: G), HA (auth: H), IA (auth: I), JA (auth: J), KA (auth: K), LA (auth: L), MA (auth: M), NA (auth: N), OA (auth: O), PA (auth: P), QA (auth: Q), RA (auth: R), SA (auth: S), TA (auth: T), UA (auth: U), VA (auth: V), WA (auth: W), XA (auth: X), YA (auth: Y), ZA (auth: Z), AB (auth: a), BB (auth: b), CB (auth: c), DB (auth: d), EB (auth: e), FB (auth: f), GB (auth: g), HB (auth: h), IB (auth: i), JB (auth: j), KB (auth: k), LB (auth: l), MB (auth: m), NB (auth: n), OB (auth: o), PB (auth: p), QB (auth: q), RB (auth: r), SB (auth: s), TB (auth: t), UB (auth: u), VB (auth: v), WB (auth: w), XB (auth: x), YB (auth: y), ZB (auth: z)
Chain Length:466
Number of Molecules:78
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Vimentin filaments integrate low-complexity domains in a complex helical structure.
Nat.Struct.Mol.Biol. 31 939 949 (2024)
PMID: 38632361 DOI: 10.1038/s41594-024-01261-2

Abstact

Intermediate filaments (IFs) are integral components of the cytoskeleton. They provide cells with tissue-specific mechanical properties and are involved in numerous cellular processes. Due to their intricate architecture, a 3D structure of IFs has remained elusive. Here we use cryo-focused ion-beam milling, cryo-electron microscopy and tomography to obtain a 3D structure of vimentin IFs (VIFs). VIFs assemble into a modular, intertwined and flexible helical structure of 40 α-helices in cross-section, organized into five protofibrils. Surprisingly, the intrinsically disordered head domains form a fiber in the lumen of VIFs, while the intrinsically disordered tails form lateral connections between the protofibrils. Our findings demonstrate how protein domains of low sequence complexity can complement well-folded protein domains to construct a biopolymer with striking mechanical strength and stretchability.

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Primary Citation of related structures