8RUW image
Deposition Date 2024-01-31
Release Date 2024-10-16
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8RUW
Keywords:
Title:
Crystal structure of Archaeoglobus fulgidus (S)-3-O-geranylgeranylglyceryl phosphate synthase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.48 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Geranylgeranylglyceryl phosphate synthase
Gene (Uniprot):AF_0403
Chain IDs:A (auth: B), B (auth: A), C, D, E, F
Chain Length:250
Number of Molecules:6
Biological Source:Archaeoglobus fulgidus DSM 4304
Primary Citation
Biocatalytic Ether Lipid Synthesis by an Archaeal Glycerolprenylase.
Angew.Chem.Int.Ed.Engl. 63 e202412597 e202412597 (2024)
PMID: 39359010 DOI: 10.1002/anie.202412597

Abstact

Although ethers are common in secondary natural products, they are an underrepresented functional group in primary metabolism. As such, there are comparably few enzymes capable of constructing ether bonds in a general fashion. However, such enzymes are highly sought after for synthetic applications as they typically operate with higher regioselectivity and under milder conditions than traditional organochemical approaches. To expand the repertoire of well characterized ether synthases, we herein report on a promiscuous archaeal prenyltransferase from the scarcely researched family of geranylgeranylglyceryl phosphate synthases (GGGPSs or G3PSs). We show that the ultrastable Archaeoglobus fulgidus G3PS makes various (E)- and (Z)-configured prenyl glycerol ethers from the corresponding pyrophosphates while exerting perfect control over the configuration at the glycerol unit. Based on experimental and computational data, we propose a mechanism for this enzyme which involves an intermediary prenyl carbocation equivalent. As such, this study provides the fundamental understanding and methods to introduce G3PSs into the biocatalytic alkylation toolbox.

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