8RTX image
Entry Detail
PDB ID:
8RTX
Keywords:
Title:
Crystal Structure of an Anti-idiotype Fab Fragment
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-01-29
Release Date:
2024-09-18
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Anti-IC Fab fragment B12 light chain
Chain IDs:A, C, E
Chain Length:214
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Anti-IC Fab fragment B12 heavy chain
Chain IDs:B, D, F
Chain Length:227
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural insights into ternary immunocomplex formation and cross-reactivity: binding of an anti-immunocomplex FabB12 to Fab220-testosterone complex.
Febs J. 291 4744 4756 (2024)
PMID: 39206623 DOI: 10.1111/febs.17258

Abstact

Anti-immunocomplex (Anti-IC) antibodies have been used in developing noncompetitive immunoassays for detecting small molecule analytics (haptens). These antibodies bind specifically to the primary antibody in complex with hapten. Although several anti-IC antibody-based immunoassays have been developed, structural studies of these systems are very limited. In this study, we determined the crystal structures of anti-testosterone Fab220 in complex with testosterone and the corresponding anti-IC antibody FabB12. The structure of the ternary complex of testosterone, Fab220, and FabB12 was predicted using LightDock and AlphaFold. The ternary complex has a large (~ 1100 Å2) interface between antibodies. The A-ring of the testosterone bound by Fab220 also participates in the binding of the anti-IC antibody. The structural analysis was complemented by native mass spectrometry. The affinities for testosterone (TES) and three cross-reactive steroids [dihydrotestosterone (DHT), androstenedione (A4), and dehydroepiandrosterone sulfate (DHEA-S)] were measured, and ternary complex formation was studied. The results clearly show the ternary complex formation in the solution. Although DHT showed significant cross-reactivity, A4 and DHEA-S exhibited minor cross-reactivity.

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