8RTD image
Deposition Date 2024-01-25
Release Date 2024-06-19
Last Version Date 2024-08-14
Entry Detail
PDB ID:
8RTD
Title:
Stalk-Arches-IMC structure from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.33 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TrwJ protein
Chain IDs:A, C (auth: B), E (auth: C), G (auth: K), I (auth: E)
Chain Length:229
Number of Molecules:5
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:TrwG protein
Chain IDs:B (auth: D), D (auth: F), F (auth: G), R (auth: Q), T (auth: S), V (auth: U), X, Y, AA (auth: b), BA (auth: c), CA (auth: d), HA (auth: i)
Chain Length:231
Number of Molecules:12
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:TrwI protein
Chain IDs:J (auth: L), K (auth: M), M (auth: H), O (auth: I), Q (auth: J)
Chain Length:342
Number of Molecules:5
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Type IV secretion system protein virB4
Chain IDs:N (auth: O), P, U (auth: T), W (auth: V), FA (auth: g), GA (auth: h)
Chain Length:231
Number of Molecules:6
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:TrwE protein
Chain IDs:H (auth: a), Z, DA (auth: e)
Chain Length:229
Number of Molecules:3
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:TrwM protein
Chain IDs:L (auth: j), S (auth: R), EA (auth: f)
Chain Length:104
Number of Molecules:3
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J. 43 3287 3306 (2024)
PMID: 38886579 DOI: 10.1038/s44318-024-00135-z

Abstact

Conjugative type IV secretion systems (T4SS) mediate bacterial conjugation, a process that enables the unidirectional exchange of genetic materials between a donor and a recipient bacterial cell. Bacterial conjugation is the primary means by which antibiotic resistance genes spread among bacterial populations (Barlow 2009; Virolle et al, 2020). Conjugative T4SSs form pili: long extracellular filaments that connect with recipient cells. Previously, we solved the cryo-electron microscopy (cryo-EM) structure of a conjugative T4SS. In this article, based on additional data, we present a more complete T4SS cryo-EM structure than that published earlier. Novel structural features include details of the mismatch symmetry within the OMCC, the presence of a fourth VirB8 subunit in the asymmetric unit of both the arches and the inner membrane complex (IMC), and a hydrophobic VirB5 tip in the distal end of the stalk. Additionally, we provide previously undescribed structural insights into the protein VirB10 and identify a novel regulation mechanism of T4SS-mediated pilus biogenesis by this protein, that we believe is a key checkpoint for this process.

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Primary Citation of related structures