8RTB image
Entry Detail
PDB ID:
8RTB
EMDB ID:
Title:
Extended inner membrane complex (IMC) protomer structure (TrwM/VirB3-TrwK/VirB4-TrwI/VirB6-TrwG/VirB8-TrwE/VirB10) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-01-25
Release Date:
2024-06-19
Method Details:
Experimental Method:
Resolution:
3.83 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TrwK protein
Chain IDs:B (auth: A), C (auth: B)
Chain Length:823
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:TrwM protein
Chain IDs:A (auth: C)
Chain Length:104
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:TrwG protein
Chain IDs:D (auth: E), E (auth: D), F, G
Chain Length:231
Number of Molecules:4
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:TrwE protein
Chain IDs:H
Chain Length:395
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:TrwI protein
Chain IDs:I (auth: J)
Chain Length:342
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J. 43 3287 3306 (2024)
PMID: 38886579 DOI: 10.1038/s44318-024-00135-z

Abstact

Conjugative type IV secretion systems (T4SS) mediate bacterial conjugation, a process that enables the unidirectional exchange of genetic materials between a donor and a recipient bacterial cell. Bacterial conjugation is the primary means by which antibiotic resistance genes spread among bacterial populations (Barlow 2009; Virolle et al, 2020). Conjugative T4SSs form pili: long extracellular filaments that connect with recipient cells. Previously, we solved the cryo-electron microscopy (cryo-EM) structure of a conjugative T4SS. In this article, based on additional data, we present a more complete T4SS cryo-EM structure than that published earlier. Novel structural features include details of the mismatch symmetry within the OMCC, the presence of a fourth VirB8 subunit in the asymmetric unit of both the arches and the inner membrane complex (IMC), and a hydrophobic VirB5 tip in the distal end of the stalk. Additionally, we provide previously undescribed structural insights into the protein VirB10 and identify a novel regulation mechanism of T4SS-mediated pilus biogenesis by this protein, that we believe is a key checkpoint for this process.

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Primary Citation of related structures