8RT8 image
Entry Detail
PDB ID:
8RT8
EMDB ID:
Title:
Conformation-C of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-01-25
Release Date:
2024-06-19
Method Details:
Experimental Method:
Resolution:
3.05 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TrwE protein
Chain IDs:A, D, G, J, M, P, S, V, Y, BA (auth: b), EA (auth: e), HA (auth: h), KA (auth: k), NA (auth: n), QA (auth: u), SA (auth: y)
Chain Length:47
Number of Molecules:16
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:TrwF protein
Chain IDs:B, E, H, K, N, Q, T, W, Z, CA (auth: c), FA (auth: f), IA (auth: i), LA (auth: l), OA (auth: o), RA (auth: v), TA (auth: z)
Chain Length:395
Number of Molecules:16
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:TrwH protein
Chain IDs:C, F, I, L, O, R, U, X, AA (auth: a), DA (auth: d), GA (auth: g), JA (auth: j), MA (auth: m), PA (auth: p)
Chain Length:47
Number of Molecules:14
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J. 43 3287 3306 (2024)
PMID: 38886579 DOI: 10.1038/s44318-024-00135-z

Abstact

Conjugative type IV secretion systems (T4SS) mediate bacterial conjugation, a process that enables the unidirectional exchange of genetic materials between a donor and a recipient bacterial cell. Bacterial conjugation is the primary means by which antibiotic resistance genes spread among bacterial populations (Barlow 2009; Virolle et al, 2020). Conjugative T4SSs form pili: long extracellular filaments that connect with recipient cells. Previously, we solved the cryo-electron microscopy (cryo-EM) structure of a conjugative T4SS. In this article, based on additional data, we present a more complete T4SS cryo-EM structure than that published earlier. Novel structural features include details of the mismatch symmetry within the OMCC, the presence of a fourth VirB8 subunit in the asymmetric unit of both the arches and the inner membrane complex (IMC), and a hydrophobic VirB5 tip in the distal end of the stalk. Additionally, we provide previously undescribed structural insights into the protein VirB10 and identify a novel regulation mechanism of T4SS-mediated pilus biogenesis by this protein, that we believe is a key checkpoint for this process.

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Primary Citation of related structures