8RT5 image
Deposition Date 2024-01-25
Release Date 2024-06-19
Last Version Date 2024-08-14
Entry Detail
PDB ID:
8RT5
Title:
I-layer structure (TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.69 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TrwE protein
Gene (Uniprot):trwE
Chain IDs:A, C (auth: D), E (auth: G), G (auth: J), I (auth: M), K (auth: P), M (auth: S), O (auth: u), Q (auth: V), S (auth: Y), U (auth: b), W (auth: e), Y (auth: h), AA (auth: k), CA (auth: n), EA (auth: y)
Chain Length:395
Number of Molecules:16
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:TrwF protein
Gene (Uniprot):trwF
Chain IDs:B, D (auth: E), F (auth: H), H (auth: K), J (auth: N), L (auth: Q), N (auth: T), P (auth: v), R (auth: W), T (auth: Z), V (auth: c), X (auth: f), Z (auth: i), BA (auth: l), DA (auth: o), FA (auth: z)
Chain Length:266
Number of Molecules:16
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J. 43 3287 3306 (2024)
PMID: 38886579 DOI: 10.1038/s44318-024-00135-z

Abstact

Conjugative type IV secretion systems (T4SS) mediate bacterial conjugation, a process that enables the unidirectional exchange of genetic materials between a donor and a recipient bacterial cell. Bacterial conjugation is the primary means by which antibiotic resistance genes spread among bacterial populations (Barlow 2009; Virolle et al, 2020). Conjugative T4SSs form pili: long extracellular filaments that connect with recipient cells. Previously, we solved the cryo-electron microscopy (cryo-EM) structure of a conjugative T4SS. In this article, based on additional data, we present a more complete T4SS cryo-EM structure than that published earlier. Novel structural features include details of the mismatch symmetry within the OMCC, the presence of a fourth VirB8 subunit in the asymmetric unit of both the arches and the inner membrane complex (IMC), and a hydrophobic VirB5 tip in the distal end of the stalk. Additionally, we provide previously undescribed structural insights into the protein VirB10 and identify a novel regulation mechanism of T4SS-mediated pilus biogenesis by this protein, that we believe is a key checkpoint for this process.

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Primary Citation of related structures