8RRU image
Entry Detail
PDB ID:
8RRU
EMDB ID:
Title:
Structure of RyR1 reconstituted into lipid liposomes in primed state in complex with FKBP and Nb9657.
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-01-23
Release Date:
2024-10-09
Method Details:
Experimental Method:
Resolution:
4.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Peptidyl-prolyl cis-trans isomerase FKBP1B
Chain IDs:A, B (auth: D), C (auth: H), D (auth: I)
Chain Length:107
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Ryanodine receptor 1
Chain IDs:E (auth: B), F (auth: E), G, H (auth: J)
Chain Length:5027
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Description:Nanobody 9657
Chain IDs:I (auth: C), J (auth: F), K, L (auth: M)
Chain Length:137
Number of Molecules:4
Biological Source:Vicugna pacos
Primary Citation
Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem. 300 107734 107734 (2024)
PMID: 39233227 DOI: 10.1016/j.jbc.2024.107734

Abstact

Ryanodine receptors (RyRs) are large Ca2+ release channels residing in the endoplasmic or sarcoplasmic reticulum membrane. Three isoforms of RyRs have been identified in mammals, the disfunction of which has been associated with a series of life-threatening diseases. The need for large amounts of native tissue or eukaryotic cell cultures limits advances in structural studies of RyRs. Here, we report a method that utilizes nanobodies to purify RyRs from only 5 mg of total protein. The purification process, from isolated membranes to cryo-EM grade protein, is achieved within 4 h on the bench, yielding protein usable for cryo-EM analysis. This is demonstrated by solving the structures of rabbit RyR1, solubilized in detergent, reconstituted into lipid nanodiscs or liposomes, and bovine RyR2 reconstituted in nanodisc, and mouse RyR2 in detergent. The reported method facilitates structural studies of RyRs directed toward drug development and is useful in cases where the amount of starting material is limited.

Legend

Protein

Chemical

Disease

Primary Citation of related structures