8RQK image
Deposition Date 2024-01-18
Release Date 2025-01-29
Last Version Date 2025-01-29
Entry Detail
PDB ID:
8RQK
Keywords:
TRANSCRIPTION
Title:
Structure of the complete Vaccinia DNA-dependent RNA polymerase complex at 2.65A resolution
Biological Source:
Source Organism:
Vaccinia virus (Taxon ID: 10245)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Vaccinia virus
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.65 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8RQK validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 147 kDa polypeptide
Gene (Uniprot):OPG105
Chain IDs:A
Chain Length:1286
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20504 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 133 kDa polypeptide
Gene (Uniprot):OPG151
Chain IDs:B
Chain Length:1164
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68694 Pfam ID:PF12415, PF04565, PF04567, PF00562, PF04560
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 35 kDa subunit
Gene (Uniprot):OPG156
Chain IDs:C
Chain Length:305
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P21087 Pfam ID:PF03396
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 22 kDa subunit
Gene (Uniprot):OPG103
Chain IDs:D (auth: E)
Chain Length:185
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68608 Pfam ID:PF05273
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 19 kDa subunit
Gene (Uniprot):OPG131
Chain IDs:P (auth: F)
Chain Length:164
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68610 Pfam ID:PF05320
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 18 kDa subunit
Gene (Uniprot):OPG119
Chain IDs:E (auth: G)
Chain Length:161
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P21034 Pfam ID:PF03293
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase-associated transcription-specificity factor RAP94
Gene (Uniprot):OPG109
Chain IDs:F (auth: I)
Chain Length:795
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68439 Pfam ID:PF03294
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 7 kDa subunit
Gene (Uniprot):OPG090
Chain IDs:G (auth: J)
Chain Length:63
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P68315 Pfam ID:PF05864
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Early transcription factor 82 kDa subunit
Gene (Uniprot):OPG133
Chain IDs:H (auth: K)
Chain Length:710
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20635 Pfam ID:PF04441
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mRNA-capping enzyme regulatory subunit OPG124
Gene (Uniprot):OPG124
Chain IDs:I (auth: L)
Chain Length:287
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20980 Pfam ID:PF03341
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mRNA-capping enzyme catalytic subunit
Gene (Uniprot):OPG113
Chain IDs:J (auth: O)
Chain Length:844
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20979 Pfam ID:PF10640, PF21004, PF21005, PF03291
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Core protein OPG073
Gene (Uniprot):OPG073
Chain IDs:K (auth: Q), L (auth: R)
Chain Length:129
Number of Molecules:2
Biological Source:Vaccinia virus
UniProt ID:P68449 Pfam ID:PF06138
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase 30 kDa polypeptide
Gene (Uniprot):OPG066
Chain IDs:M (auth: S)
Chain Length:259
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P21082 Pfam ID:PF12410, PF01096
Polymer Type:polyribonucleotide
Molecule:URQ-UUG1-1 tRNA (72-MER)
Chain IDs:N (auth: U)
Chain Length:72
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoside triphosphatase I
Gene (Uniprot):OPG123
Chain IDs:O (auth: Y)
Chain Length:631
Number of Molecules:1
Biological Source:Vaccinia virus
UniProt ID:P20637 Pfam ID:PF00176, PF00271, PF08469
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
1MA N A modified residue
OMC N C modified residue
SEP M SER modified residue
Ligand Molecules
MG
ZN
Primary Citation
Structure of the complete Vaccinia DNA-dependent RNA polymerase complex at 2.65A resolution
To Be Published ? ? ? (?)
Primary Citation of related structures
6RFL