8RPR image
Entry Detail
PDB ID:
8RPR
Keywords:
Title:
Crystal Structure of SgvM methyltransferase in complex with alpha-ketoleucine and Zn2+ ion
Biological Source:
PDB Version:
Deposition Date:
2024-01-16
Release Date:
2024-07-24
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Methyltransferase
Chain IDs:A
Chain Length:339
Number of Molecules:1
Biological Source:Streptomyces griseoviridis
Primary Citation
Structures and Protein Engineering of the alpha-Keto Acid C-Methyltransferases SgvM and MrsA for Rational Substrate Transfer.
Chembiochem 25 e202400258 e202400258 (2024)
PMID: 38887142 DOI: 10.1002/cbic.202400258

Abstact

S-adenosyl-l-methionine-dependent methyltransferases (MTs) are involved in the C-methylation of a variety of natural products. The MTs SgvM from Streptomyces griseoviridis and MrsA from Pseudomonas syringae pv. syringae catalyze the methylation of the β-carbon atom of α-keto acids in the biosynthesis of the antibiotic natural products viridogrisein and 3-methylarginine, respectively. MrsA shows high substrate selectivity for 5-guanidino-2-oxovalerate, while other α-keto acids, such as the SgvM substrates 4-methyl-2-oxovalerate, 2-oxovalerate, and phenylpyruvate, are not accepted. Here we report the crystal structures of SgvM and MrsA in the apo form and bound with substrate or S-adenosyl-l-methionine. By investigating key residues for substrate recognition in the active sites of both enzymes and engineering MrsA by site-directed mutagenesis, the substrate range of MrsA was extended to accept α-keto acid substrates of SgvM with uncharged and lipophilic β-residues. Our results showcase the transfer of the substrate scope of α-keto acid MTs from different biosynthetic pathways by rational design.

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