8RPA image
Deposition Date 2024-01-13
Release Date 2025-01-29
Last Version Date 2025-04-09
Entry Detail
PDB ID:
8RPA
Keywords:
Title:
Crystal structure of Zea mays adenosine kinase 3 (ZmADK3) in complex with AP5A
Biological Source:
Source Organism:
Zea mays (Taxon ID: 4577)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.26 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
I 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Adenosine kinase
Gene (Uniprot):103646212
Chain IDs:A
Chain Length:361
Number of Molecules:1
Biological Source:Zea mays
Primary Citation
A monomer-dimer switch modulates the activity of plant adenosine kinase.
J.Exp.Bot. ? ? ? (2025)
PMID: 40063605 DOI: 10.1093/jxb/eraf094

Abstact

Adenosine undergoes ATP-dependent phosphorylation catalyzed by adenosine kinase (ADK). In plants, ADK also phosphorylates cytokinin ribosides, transport forms of the hormone. Here, we investigated the substrate preferences, oligomeric states and structures of ADKs from moss (Physcomitrella patens) and maize (Zea mays) alongside metabolomic and phenotypic analyses. We showed that dexamethasone-inducible ZmADK overexpressor lines in Arabidopsis can benefit from a higher number of lateral roots and larger root areas under nitrogen starvation. We discovered that maize and moss enzymes can form dimers upon increasing protein concentration, setting them apart from the monomeric human and protozoal ADKs. Structural and kinetic analyses revealed a catalytically inactive unique dimer. Within the dimer, both active sites are mutually blocked. The activity of moss ADKs, exhibiting a higher propensity to dimerize, was tenfold lower compared to maize ADKs. Two monomeric structures in a ternary complex highlight the characteristic transition from an open to a closed state upon substrate binding. This suggests that the oligomeric state switch can modulate the activity of moss ADKs and likely other plant ADKs. Moreover, dimer association represents a novel negative feedback mechanism, helping to maintain steady levels of adenosine and AMP.

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