8ROV image
Deposition Date 2024-01-12
Release Date 2024-10-16
Last Version Date 2024-12-25
Entry Detail
PDB ID:
8ROV
Title:
Human dectin-2 with dimerization domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.36 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:C-type lectin domain family 6 member A
Gene (Uniprot):CLEC6A
Chain IDs:A, B
Chain Length:193
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Interactions that define the arrangement of sugar-binding sites in BDCA-2 and dectin-2 dimers.
Glycobiology 34 ? ? (2024)
PMID: 39361900 DOI: 10.1093/glycob/cwae082

Abstact

The sugar-binding receptors dectin-2 and blood dendritic cell antigen 2 (BDCA-2) bind oligosaccharide ligands through extracellular carbohydrate-recognition domains (CRDs) and initiate intracellular signaling through Fc receptor γ adapters (FcRγ). Dectin-2 stimulates macrophages in response to pathogen binding while BDCA-2 modulates cytokine production in plasmacytoid dendritic cells. The oligomeric states of these receptors and the orientations of their CRDs have been investigated by analysis of a naturally occurring disulfide-bonded variant of BDCA-2 and by replacement of transmembrane domains with N-terminal dimerization domains to create extracellular domain dimers of both dectin-2 and BDCA-2. Analysis of these constructs, as well as previously described crystal structures of the CRDs from these proteins and a novel structure of an extended version of the extracellular domain of dectin-2, showed that there is only limited interaction of the CRDs in the dimers, but interactions can be stabilized by the presence of the neck region. The resulting orientation of sugar-binding sites in the dimers would favor crosslinking of multiple dimers by oligosaccharide ligands, causing clustering of FcRγ to initiate signaling.

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Primary Citation of related structures