8RMM image
Deposition Date 2024-01-08
Release Date 2024-06-19
Last Version Date 2025-07-09
Entry Detail
PDB ID:
8RMM
Title:
Structure of heteromeric CALHM2/4 channel in complex with synthetic nanobodies SbC2 and SbC4
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.26 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calcium homeostasis modulator protein 4
Gene (Uniprot):CALHM4
Chain IDs:A, C (auth: B), S (auth: K)
Chain Length:322
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calcium homeostasis modulator protein 2
Gene (Uniprot):CALHM2
Chain IDs:E (auth: C), F (auth: D), H (auth: E), J (auth: F), L (auth: G), N (auth: H), P (auth: I), R (auth: J)
Chain Length:331
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Synthetic nanobody SbC4
Chain IDs:B (auth: L), D (auth: M), T (auth: U)
Chain Length:119
Number of Molecules:3
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:Synthetic nanobody SbC2
Chain IDs:G (auth: O), I (auth: P), K (auth: Q), M (auth: R), O (auth: S), Q (auth: T), U (auth: N)
Chain Length:130
Number of Molecules:7
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structural features of heteromeric channels composed of CALHM2 and CALHM4 paralogs.
Elife 13 ? ? (2024)
PMID: 38896440 DOI: 10.7554/eLife.96138

Abstact

The CALHM proteins constitute a family of large pore channels that contains six closely related paralogs in humans. Two family members, CALHM1 and 3, have been associated with the release of ATP during taste sensation. Both proteins form heteromeric channels that activate at positive potential and decreased extracellular Ca2+ concentration. Although the structures of several family members displayed large oligomeric organizations of different size, their function has in most cases remained elusive. Our previous study has identified the paralogs CALHM2, 4 and, 6 to be highly expressed in the placenta and defined their structural properties as membrane proteins exhibiting features of large pore channels with unknown activation properties (Drożdżyk et al., 2020). Here, we investigated whether these placental paralogs would form heteromers and characterized heteromeric complexes consisting of CALHM2 and CALHM4 subunits using specific binders as fiducial markers. Both proteins assemble with different stoichiometries with the largest population containing CALHM2 as the predominant component. In these oligomers, the subunits segregate and reside in their preferred conformation found in homomeric channels. Our study has thus revealed the properties that govern the formation of CALHM heteromers in a process of potential relevance in a cellular context.

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Primary Citation of related structures
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