8RMJ image
Entry Detail
PDB ID:
8RMJ
Title:
Drosophila Semaphorin 2b in complex with glycosaminoglycan mimic SOS
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-01-08
Release Date:
2024-07-31
Method Details:
Experimental Method:
Resolution:
2.79 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:FI18622p1
Chain IDs:A
Chain Length:657
Number of Molecules:1
Biological Source:Drosophila melanogaster
Ligand Molecules
Peptide-like Molecules
PRD_900013
Primary Citation
Molecular mechanisms of proteoglycan-mediated semaphorin signaling in axon guidance.
Proc.Natl.Acad.Sci.USA 121 e2402755121 e2402755121 (2024)
PMID: 39042673 DOI: 10.1073/pnas.2402755121

Abstact

The precise assembly of a functional nervous system relies on axon guidance cues. Beyond engaging their cognate receptors and initiating signaling cascades that modulate cytoskeletal dynamics, guidance cues also bind components of the extracellular matrix, notably proteoglycans, yet the role and mechanisms of these interactions remain poorly understood. We found that Drosophila secreted semaphorins bind specifically to glycosaminoglycan (GAG) chains of proteoglycans, showing a preference based on the degree of sulfation. Structural analysis of Sema2b unveiled multiple GAG-binding sites positioned outside canonical plexin-binding site, with the highest affinity binding site located at the C-terminal tail, characterized by a lysine-rich helical arrangement that appears to be conserved across secreted semaphorins. In vivo studies revealed a crucial role of the Sema2b C-terminal tail in specifying the trajectory of olfactory receptor neurons. We propose that secreted semaphorins tether to the cell surface through interactions with GAG chains of proteoglycans, facilitating their presentation to cognate receptors on passing axons.

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