8RMG image
Entry Detail
PDB ID:
8RMG
EMDB ID:
Keywords:
Title:
Structure of the core ISC complex under turnover conditions (FDX2-bound in distal conformation)
Biological Source:
PDB Version:
Deposition Date:
2024-01-05
Release Date:
2024-12-18
Method Details:
Experimental Method:
Resolution:
2.46 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Isoform Mitochondrial of Cysteine desulfurase
Chain IDs:A, F (auth: E)
Chain Length:404
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:LYR motif-containing protein 4
Chain IDs:B, G (auth: F)
Chain Length:115
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Acyl carrier protein
Chain IDs:C, H (auth: G)
Chain Length:78
Number of Molecules:2
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Description:Isoform 1 of Iron-sulfur cluster assembly enzyme ISCU
Chain IDs:D, I (auth: H)
Chain Length:143
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ferredoxin-2, mitochondrial
Chain IDs:E (auth: I)
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LLP A LYS modified residue
Primary Citation
Two-stage binding of mitochondrial ferredoxin-2 to the core iron-sulfur cluster assembly complex.
Nat Commun 15 10559 10559 (2024)
PMID: 39632806 DOI: 10.1038/s41467-024-54585-4

Abstact

Iron-sulfur (FeS) protein biogenesis in eukaryotes begins with the de novo assembly of [2Fe-2S] clusters by the mitochondrial core iron-sulfur cluster assembly (ISC) complex. This complex comprises the scaffold protein ISCU2, the cysteine desulfurase subcomplex NFS1-ISD11-ACP1, the allosteric activator frataxin (FXN) and the electron donor ferredoxin-2 (FDX2). The structural interaction of FDX2 with the complex remains unclear. Here, we present cryo-EM structures of the human FDX2-bound core ISC complex showing that FDX2 and FXN compete for overlapping binding sites. FDX2 binds in either a 'distal' conformation, where its helix F interacts electrostatically with an arginine patch of NFS1, or a 'proximal' conformation, where this interaction tightens and the FDX2-specific C terminus binds to NFS1, facilitating the movement of the [2Fe-2S] cluster of FDX2 closer to the ISCU2 FeS cluster assembly site for rapid electron transfer. Structure-based mutational studies verify the contact areas of FDX2 within the core ISC complex.

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Primary Citation of related structures