8RKS image
Deposition Date 2023-12-30
Release Date 2024-04-24
Last Version Date 2024-04-24
Entry Detail
PDB ID:
8RKS
Title:
Structure of VPS29-VPS35 bound to the LFa motif R21 of Fam21.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 29
Gene (Uniprot):VPS29
Chain IDs:A, C, E, G
Chain Length:182
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 35
Gene (Uniprot):VPS35
Chain IDs:B, D, F, H
Chain Length:311
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:WASH complex subunit 2A
Gene (Uniprot):WASHC2A
Chain IDs:I (auth: K), J (auth: I), K (auth: J), L
Chain Length:7
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Retromer-mediated recruitment of the WASH complex involves discrete interactions between VPS35, VPS29, and FAM21.
Protein Sci. 33 e4980 e4980 (2024)
PMID: 38607248 DOI: 10.1002/pro.4980

Abstact

Endosomal trafficking ensures the proper distribution of lipids and proteins to various cellular compartments, facilitating intracellular communication, nutrient transport, waste disposal, and the maintenance of cell structure. Retromer, a peripheral membrane protein complex, plays an important role in this process by recruiting the associated actin-polymerizing WASH complex to establish distinct sorting domains. The WASH complex is recruited through the interaction of the VPS35 subunit of retromer with the WASH complex subunit FAM21. Here, we report the identification of two separate fragments of FAM21 that interact with VPS35, along with a third fragment that binds to the VPS29 subunit of retromer. The crystal structure of VPS29 bound to a peptide derived from FAM21 shows a distinctive sharp bend that inserts into a conserved hydrophobic pocket with a binding mode similar to that adopted by other VPS29 effectors. Interestingly, despite the network of interactions between FAM21 and retromer occurring near the Parkinson's disease-linked mutation (D620N) in VPS35, this mutation does not significantly impair the direct association with FAM21 in vitro.

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Primary Citation of related structures