8RKA image
Deposition Date 2023-12-23
Release Date 2024-08-14
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8RKA
Keywords:
Title:
Connector complex of empty bacteriophage JBD30 particle computed in C12 symmetry
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.12 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Portal protein
Gene (Uniprot):JBD30_032
Chain IDs:A
Chain Length:526
Number of Molecules:1
Biological Source:Pseudomonas phage JBD30
Polymer Type:polypeptide(L)
Molecule:DUF1320 domain-containing protein
Gene (Uniprot):JBD30_041
Chain IDs:B
Chain Length:138
Number of Molecules:1
Biological Source:Pseudomonas phage JBD30
Ligand Molecules
Primary Citation
Structure and replication of Pseudomonas aeruginosa phage JBD30.
Embo J. 43 4384 4405 (2024)
PMID: 39143239 DOI: 10.1038/s44318-024-00195-1

Abstact

Bacteriophages are the most abundant biological entities on Earth, but our understanding of many aspects of their lifecycles is still incomplete. Here, we have structurally analysed the infection cycle of the siphophage Casadabanvirus JBD30. Using its baseplate, JBD30 attaches to Pseudomonas aeruginosa via the bacterial type IV pilus, whose subsequent retraction brings the phage to the bacterial cell surface. Cryo-electron microscopy structures of the baseplate-pilus complex show that the tripod of baseplate receptor-binding proteins attaches to the outer bacterial membrane. The tripod and baseplate then open to release three copies of the tape-measure protein, an event that is followed by DNA ejection. JBD30 major capsid proteins assemble into procapsids, which expand by 7% in diameter upon filling with phage dsDNA. The DNA-filled heads are finally joined with 180-nm-long tails, which bend easily because flexible loops mediate contacts between the successive discs of major tail proteins. It is likely that the structural features and replication mechanisms described here are conserved among siphophages that utilize the type IV pili for initial cell attachment.

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Primary Citation of related structures