8RJ7 image
Deposition Date 2023-12-20
Release Date 2024-11-27
Last Version Date 2024-11-27
Entry Detail
PDB ID:
8RJ7
Keywords:
ANTIVIRAL PROTEIN
Title:
The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.29
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Camelus dromedarius (Taxon ID: 9838)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.10 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32
8RJ7 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A, B (auth: C), C (auth: E), D (auth: G), I
Chain Length:203
Number of Molecules:5
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF09408
Polymer Type:polypeptide(L)
Molecule:Camel-derived nanobody 1.29
Chain IDs:E (auth: B), F (auth: D), G (auth: F), H, J
Chain Length:126
Number of Molecules:5
Biological Source:Camelus dromedarius
Ligand Molecules
LYS
NAG
SO4
Primary Citation
The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.29
To Be Published ? ? ? (?)
Primary Citation of related structures
8RJ7