8RIO image
Deposition Date 2023-12-19
Release Date 2025-01-01
Last Version Date 2025-04-16
Entry Detail
PDB ID:
8RIO
Keywords:
Title:
Beta-keto acid cleavage enzyme from Paracoccus denitrificans
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:3-keto-5-aminohexanoate cleavage protein
Gene (Uniprot):Pden_3578
Chain IDs:A, B
Chain Length:310
Number of Molecules:2
Biological Source:Paracoccus denitrificans PD1222
Primary Citation
Design and implementation of aerobic and ambient CO 2 -reduction as an entry-point for enhanced carbon fixation.
Nat Commun 16 3134 3134 (2025)
PMID: 40169551 DOI: 10.1038/s41467-025-57549-4

Abstact

The direct reduction of CO2 into one-carbon molecules is key to highly efficient biological CO2-fixation. However, this strategy is currently restricted to anaerobic organisms and low redox potentials. In this study, we introduce the CORE cycle, a synthetic metabolic pathway that converts CO2 to formate at aerobic conditions and ambient CO2 levels, using only NADPH as a reductant. Combining theoretical pathway design and analysis, enzyme bioprospecting and high-throughput screening, modular assembly and adaptive laboratory evolution, we realize the CORE cycle in vivo and demonstrate that the cycle supports growth of E. coli by supplementing C1-metabolism and serine biosynthesis from CO2. We further analyze the theoretical potential of the CORE cycle as a new entry-point for carbon in photorespiration and autotrophy. Overall, our work expands the solution space for biological carbon reduction, offering a promising approach to enhance CO2 fixation processes such as photosynthesis, and opening avenues for synthetic autotrophy.

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Primary Citation of related structures
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