8RI3 image
Deposition Date 2023-12-18
Release Date 2024-02-28
Last Version Date 2024-02-28
Entry Detail
PDB ID:
8RI3
Keywords:
Title:
Crystal structure of transplatin/B-DNA adduct obtained upon 7 days of soaking
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Chain IDs:A, B
Chain Length:12
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
On the mechanism of action of arsenoplatins: arsenoplatin-1 binding to a B-DNA dodecamer.
Dalton Trans 53 3476 3483 (2024)
PMID: 38270175 DOI: 10.1039/d3dt04302a

Abstact

The reaction of Pt-based anticancer agents with arsenic trioxide affords robust complexes known as arsenoplatins. The prototype of this family of anticancer compounds is arsenoplatin-1 (AP-1) that contains an As(OH)2 fragment linked to a Pt(II) moiety derived from cisplatin. Crystallographic and spectrometric studies of AP-1 binding to a B-DNA double helix dodecamer are presented here, in comparison with cisplatin and transplatin. Results reveal that AP-1, cisplatin and transplatin react differently with the DNA model system. Notably, in the AP-1/DNA systems, the Pt-As bond can break down with time and As-containing fragments can be released. These results have implications for the understanding of the mechanism of action of arsenoplatins.

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