8RI2 image
Entry Detail
PDB ID:
8RI2
Keywords:
Title:
Crystal structure of NLRP3 in complex with inhibitor NP3-562
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-12-18
Release Date:
2024-01-17
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NACHT, LRR and PYD domains-containing protein 3
Chain IDs:A
Chain Length:550
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Discovery of Potent, Orally Bioavailable, Tricyclic NLRP3 Inhibitors.
J.Med.Chem. 67 1544 1562 (2024)
PMID: 38175811 DOI: 10.1021/acs.jmedchem.3c02098

Abstact

NLRP3 is a molecular sensor recognizing a wide range of danger signals. Its activation leads to the assembly of an inflammasome that allows for activation of caspase-1 and subsequent maturation of IL-1β and IL-18, as well as cleavage of Gasdermin-d and pyroptotic cell death. The NLRP3 inflammasome has been implicated in a plethora of diseases including gout, type 2 diabetes, atherosclerosis, Alzheimer's disease, and cancer. In this publication, we describe the discovery of a novel, tricyclic, NLRP3-binding scaffold by high-throughput screening. The hit (1) could be optimized into an advanced compound NP3-562 demonstrating excellent potency in human whole blood and full inhibition of IL-1β release in a mouse acute peritonitis model at 30 mg/kg po dose. An X-ray structure of NP3-562 bound to the NLRP3 NACHT domain revealed a unique binding mode as compared to the known sulfonylurea-based inhibitors. In addition, NP3-562 shows also a good overall development profile.

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Primary Citation of related structures