8RDU image
Deposition Date 2023-12-08
Release Date 2024-06-19
Last Version Date 2024-07-03
Entry Detail
PDB ID:
8RDU
Title:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:sgRNA
Chain IDs:A (auth: 1)
Chain Length:261
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Molecule:Non-target strand - LE
Chain IDs:B (auth: 2)
Chain Length:68
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Molecule:Target strand -LE
Chain IDs:C (auth: 3)
Chain Length:133
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Molecule:LE
Chain IDs:D (auth: 4)
Chain Length:75
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Molecule:RE
Chain IDs:E (auth: 5)
Chain Length:74
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Molecule:Non-target strand - RE
Chain IDs:F (auth: 6)
Chain Length:79
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Molecule:Target strand
Chain IDs:G (auth: 7)
Chain Length:15
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polypeptide(L)
Molecule:ShCas12k
Chain IDs:H (auth: A)
Chain Length:698
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS15
Gene (Uniprot):rpsO
Chain IDs:I (auth: B)
Chain Length:90
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polypeptide(L)
Molecule:TniQ
Chain IDs:J (auth: C)
Chain Length:179
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polypeptide(L)
Molecule:ShTnsC
Chain IDs:K (auth: D), L (auth: E), M (auth: F), N (auth: G), O (auth: H), P (auth: I), Q (auth: J), R (auth: K), S (auth: L), T (auth: M), U (auth: N), V (auth: O), W (auth: P), X (auth: Q)
Chain Length:276
Number of Molecules:14
Biological Source:Scytonema hofmannii
Polymer Type:polypeptide(L)
Molecule:TnsB
Chain IDs:Y (auth: R), Z (auth: S), AA (auth: T), BA (auth: U), CA (auth: r), DA (auth: s), EA (auth: t), FA (auth: u)
Chain Length:584
Number of Molecules:8
Biological Source:Scytonema hofmannii
Primary Citation
Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell 84 2353 ? (2024)
PMID: 38834066 DOI: 10.1016/j.molcel.2024.05.005

Abstact

CRISPR-associated transposons (CASTs) are mobile genetic elements that co-opt CRISPR-Cas systems for RNA-guided DNA transposition. CASTs integrate large DNA cargos into the attachment (att) site independently of homology-directed repair and thus hold promise for eukaryotic genome engineering. However, the functional diversity and complexity of CASTs hinder an understanding of their mechanisms. Here, we present the high-resolution cryoelectron microscopy (cryo-EM) structure of the reconstituted ∼1 MDa post-transposition complex of the type V-K CAST, together with different assembly intermediates and diverse TnsC filament lengths, thus enabling the recapitulation of the integration complex formation. The results of mutagenesis experiments probing the roles of specific residues and TnsB-binding sites show that transposition activity can be enhanced and suggest that the distance between the PAM and att sites is determined by the lengths of the TnsB C terminus and the TnsC filament. This singular model of RNA-guided transposition provides a foundation for repurposing the system for genome-editing applications.

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