8RD6 image
Deposition Date 2023-12-07
Release Date 2024-01-17
Last Version Date 2024-01-17
Entry Detail
PDB ID:
8RD6
Title:
the C-terminal domain of TonB protein from Salmonella enterica.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein TonB
Gene (Uniprot):tonB
Chain IDs:A
Chain Length:90
Number of Molecules:1
Biological Source:Salmonella enterica
Ligand Molecules
Primary Citation
The 100-protein NMR spectra dataset: A resource for biomolecular NMR data analysis.
Sci Data 11 30 30 (2024)
PMID: 38177162 DOI: 10.1038/s41597-023-02879-5

Abstact

Multidimensional NMR spectra are the basis for studying proteins by NMR spectroscopy and crucial for the development and evaluation of methods for biomolecular NMR data analysis. Nevertheless, in contrast to derived data such as chemical shift assignments in the BMRB and protein structures in the PDB databases, this primary data is in general not publicly archived. To change this unsatisfactory situation, we present a standardized set of solution NMR data comprising 1329 2-4-dimensional NMR spectra and associated reference (chemical shift assignments, structures) and derived (peak lists, restraints for structure calculation, etc.) annotations. With the 100-protein NMR spectra dataset that was originally compiled for the development of the ARTINA deep learning-based spectra analysis method, 100 protein structures can be reproduced from their original experimental data. The 100-protein NMR spectra dataset is expected to help the development of computational methods for NMR spectroscopy, in particular machine learning approaches, and enable consistent and objective comparisons of these methods.

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Primary Citation of related structures