8RCQ image
Deposition Date 2023-12-06
Release Date 2024-01-31
Last Version Date 2024-02-14
Entry Detail
PDB ID:
8RCQ
Keywords:
Title:
Structural flexibility of Nucleoprotein of the Toscana virus in the presence of a nanobody.
Biological Source:
Source Organism:
Toscana virus (Taxon ID: 11590)
Lama glama (Taxon ID: 9844)
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.35
R-Value Work:
0.3
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nucleoprotein
Gene (Uniprot):N
Chain IDs:A
Chain Length:253
Number of Molecules:1
Biological Source:Toscana virus
Polymer Type:polypeptide(L)
Molecule:VHH
Chain IDs:B
Chain Length:137
Number of Molecules:1
Biological Source:Lama glama
Ligand Molecules
Primary Citation
Structural flexibility of Toscana virus nucleoprotein in the presence of a single-chain camelid antibody.
Acta Crystallogr D Struct Biol 80 113 122 (2024)
PMID: 38265877 DOI: 10.1107/S2059798324000196

Abstact

Phenuiviridae nucleoprotein is the main structural and functional component of the viral cycle, protecting the viral RNA and mediating the essential replication/transcription processes. The nucleoprotein (N) binds the RNA using its globular core and polymerizes through the N-terminus, which is presented as a highly flexible arm, as demonstrated in this article. The nucleoprotein exists in an `open' or a `closed' conformation. In the case of the closed conformation the flexible N-terminal arm folds over the RNA-binding cleft, preventing RNA adsorption. In the open conformation the arm is extended in such a way that both RNA adsorption and N polymerization are possible. In this article, single-crystal X-ray diffraction and small-angle X-ray scattering were used to study the N protein of Toscana virus complexed with a single-chain camelid antibody (VHH) and it is shown that in the presence of the antibody the nucleoprotein is unable to achieve a functional assembly to form a ribonucleoprotein complex.

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