8RCG image
Deposition Date 2023-12-06
Release Date 2024-05-08
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8RCG
Keywords:
Title:
W-formate dehydrogenase M405S from Desulfovibrio vulgaris
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Formate dehydrogenase, alpha subunit, selenocysteine-containing
Gene (Uniprot):fdnG-1
Mutagens:M405S
Chain IDs:A
Chain Length:1013
Number of Molecules:1
Biological Source:Nitratidesulfovibrio vulgaris str. Hildenborough
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Formate dehydrogenase, beta subunit, putative
Gene (Uniprot):DVU_0588
Chain IDs:B
Chain Length:215
Number of Molecules:1
Biological Source:Nitratidesulfovibrio vulgaris str. Hildenborough
Primary Citation
Structural and biochemical characterization of the M405S variant of Desulfovibrio vulgaris formate dehydrogenase.
Acta Crystallogr.,Sect.F 80 98 106 (2024)
PMID: 38699971 DOI: 10.1107/S2053230X24003911

Abstact

Molybdenum- or tungsten-dependent formate dehydrogenases have emerged as significant catalysts for the chemical reduction of CO2 to formate, with biotechnological applications envisaged in climate-change mitigation. The role of Met405 in the active site of Desulfovibrio vulgaris formate dehydrogenase AB (DvFdhAB) has remained elusive. However, its proximity to the metal site and the conformational change that it undergoes between the resting and active forms suggests a functional role. In this work, the M405S variant was engineered, which allowed the active-site geometry in the absence of methionine Sδ interactions with the metal site to be revealed and the role of Met405 in catalysis to be probed. This variant displayed reduced activity in both formate oxidation and CO2 reduction, together with an increased sensitivity to oxygen inactivation.

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Primary Citation of related structures
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